JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RAB3B_chr1_51902956_51995700	0/0	t0032	12120	1	1	0	0	0	0	copy fasta	RAB3B	chr1	51902956	51995700
RAB3B_chr1_51902956_51995700	0/0	t0033	12118	1	0	1	0	0	0	copy fasta	RAB3B	chr1	51902956	51995700
RAB3B_chr1_51902956_51995700	0/0	t0034	12090	1	0	0	1	0	0	copy fasta	RAB3B	chr1	51902956	51995700
RAB3B_chr1_51902956_51995700	0/0	t0035	12108	1	1	0	0	0	0	copy fasta	RAB3B	chr1	51902956	51995700
RAB3B_chr1_51902956_51995700	0/0	t0036	12118	1	0	1	0	0	0	copy fasta	RAB3B	chr1	51902956	51995700
RAB3B_chr1_51902956_51995700	0/0	t0037	12093	1	0	0	1	0	0	copy fasta	RAB3B	chr1	51902956	51995700
RAB3B_chr1_51902956_51995700	0/0	t0038	12094	1	1	0	0	0	0	copy fasta	RAB3B	chr1	51902956	51995700
RAB3B_chr1_51902956_51995700	0/0	t0039	12089	1	1	0	0	0	0	copy fasta	RAB3B	chr1	51902956	51995700
RAB3B_chr1_51902956_51995700	0/0	t0040	12090	1	1	0	0	0	0	copy fasta	RAB3B	chr1	51902956	51995700
RAB3B_chr1_51902956_51995700	0/0	t0041	12090	1	1	0	0	0	0	copy fasta	RAB3B	chr1	51902956	51995700
RAB3B_chr1_51902956_51995700	0/0	t0042	12091	1	1	0	0	0	0	copy fasta	RAB3B	chr1	51902956	51995700
RAB3B_chr1_51902956_51995700	0/0	t0043	12108	1	1	0	0	0	0	copy fasta	RAB3B	chr1	51902956	51995700
RAB3B_chr1_51902956_51995700	0/0	t0044	12095	1	0	0	0	0	1	copy fasta	RAB3B	chr1	51902956	51995700
RAB3B_chr1_51902956_51995700	0/0	t0045	12096	1	0	0	1	0	0	copy fasta	RAB3B	chr1	51902956	51995700
RAB3B_chr1_51902956_51995700	0/0	t0046	12094	1	1	0	0	0	0	copy fasta	RAB3B	chr1	51902956	51995700
RAB3B_chr1_51902956_51995700	0/0	t0047	12103	1	1	0	0	0	0	copy fasta	RAB3B	chr1	51902956	51995700
RAB3B_chr1_51902956_51995700	0/0	t0048	12096	1	1	0	0	0	0	copy fasta	RAB3B	chr1	51902956	51995700
RAB3B_chr1_51902956_51995700	0/0	t0049	12097	1	1	0	0	0	0	copy fasta	RAB3B	chr1	51902956	51995700
RAB3B_chr1_51902956_51995700	0/0	t0050	12092	1	1	0	0	0	0	copy fasta	RAB3B	chr1	51902956	51995700
RAB3B_chr1_51902956_51995700	0/0	t0051	12093	1	1	0	0	0	0	copy fasta	RAB3B	chr1	51902956	51995700
RAB3B_chr1_51902956_51995700	0/0	t0052	12093	1	1	0	0	0	0	copy fasta	RAB3B	chr1	51902956	51995700
RAB3B_chr1_51902956_51995700	0/0	t0053	12094	1	1	0	0	0	0	copy fasta	RAB3B	chr1	51902956	51995700
RAB3B_chr1_51902956_51995700	0/0	t0054	12103	1	1	0	0	0	0	copy fasta	RAB3B	chr1	51902956	51995700
RAB3C_chr5_58578075_58864394	1/0	t0001	8178	34	1	10	15	0	7	copy fasta	RAB3C	chr5	58578075	58864394
RAB3C_chr5_58578075_58864394	0/0	t0002	8168	19	7	2	5	0	5	copy fasta	RAB3C	chr5	58578075	58864394
RAB3C_chr5_58578075_58864394	0/0	t0003	8166	13	3	4	5	0	1	copy fasta	RAB3C	chr5	58578075	58864394
RAB3C_chr5_58578075_58864394	0/1	t0004	8176	12	2	3	2	3	1	copy fasta	RAB3C	chr5	58578075	58864394
RAB3C_chr5_58578075_58864394	0/0	t0005	8166	12	0	0	10	0	2	copy fasta	RAB3C	chr5	58578075	58864394
RAB3C_chr5_58578075_58864394	0/0	t0006	8178	8	8	0	0	0	0	copy fasta	RAB3C	chr5	58578075	58864394
RAB3C_chr5_58578075_58864394	0/0	t0007	8170	6	1	3	0	0	2	copy fasta	RAB3C	chr5	58578075	58864394
RAB3C_chr5_58578075_58864394	0/0	t0008	8172	5	0	2	1	0	2	copy fasta	RAB3C	chr5	58578075	58864394
RAB3C_chr5_58578075_58864394	0/0	t0009	8162	5	0	0	5	0	0	copy fasta	RAB3C	chr5	58578075	58864394
RAB3C_chr5_58578075_58864394	0/0	t0010	8168	5	1	1	2	0	1	copy fasta	RAB3C	chr5	58578075	58864394
RAB3C_chr5_58578075_58864394	0/0	t0011	8184	5	4	1	0	0	0	copy fasta	RAB3C	chr5	58578075	58864394
RAB3C_chr5_58578075_58864394	0/0	t0012	8164	3	0	1	0	2	0	copy fasta	RAB3C	chr5	58578075	58864394
RAB3C_chr5_58578075_58864394	0/0	t0013	8176	3	0	2	0	0	1	copy fasta	RAB3C	chr5	58578075	58864394
RAB3C_chr5_58578075_58864394	0/0	t0014	8168	3	0	0	3	0	0	copy fasta	RAB3C	chr5	58578075	58864394
RAB3C_chr5_58578075_58864394	0/0	t0015	8166	3	0	0	3	0	0	copy fasta	RAB3C	chr5	58578075	58864394
RAB3C_chr5_58578075_58864394	0/0	t0016	8174	3	3	0	0	0	0	copy fasta	RAB3C	chr5	58578075	58864394
RAB3C_chr5_58578075_58864394	0/0	t0017	8168	2	0	0	2	0	0	copy fasta	RAB3C	chr5	58578075	58864394
RAB3C_chr5_58578075_58864394	0/0	t0018	8166	2	0	2	0	0	0	copy fasta	RAB3C	chr5	58578075	58864394
RAB3C_chr5_58578075_58864394	0/0	t0019	8178	2	2	0	0	0	0	copy fasta	RAB3C	chr5	58578075	58864394
RAB3C_chr5_58578075_58864394	0/0	t0020	8178	2	2	0	0	0	0	copy fasta	RAB3C	chr5	58578075	58864394
RAB3C_chr5_58578075_58864394	0/0	t0021	8176	2	2	0	0	0	0	copy fasta	RAB3C	chr5	58578075	58864394
RAB3C_chr5_58578075_58864394	0/0	t0022	8174	2	0	1	1	0	0	copy fasta	RAB3C	chr5	58578075	58864394
RAB3C_chr5_58578075_58864394	0/0	t0023	8182	2	2	0	0	0	0	copy fasta	RAB3C	chr5	58578075	58864394
RAB3C_chr5_58578075_58864394	0/0	t0024	8164	2	0	0	1	1	0	copy fasta	RAB3C	chr5	58578075	58864394
RAB3C_chr5_58578075_58864394	0/0	t0025	8170	2	0	0	2	0	0	copy fasta	RAB3C	chr5	58578075	58864394
RAB3C_chr5_58578075_58864394	0/0	t0026	8182	2	0	0	2	0	0	copy fasta	RAB3C	chr5	58578075	58864394
RAB3C_chr5_58578075_58864394	0/0	t0027	8180	2	0	0	2	0	0	copy fasta	RAB3C	chr5	58578075	58864394