JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RAB3C_chr5_58578075_58864394	0/0	t0028	8188	2	0	2	0	0	0	copy fasta	RAB3C	chr5	58578075	58864394
RAB3C_chr5_58578075_58864394	0/0	t0029	8180	2	2	0	0	0	0	copy fasta	RAB3C	chr5	58578075	58864394
RAB3C_chr5_58578075_58864394	0/0	t0030	8166	1	0	1	0	0	0	copy fasta	RAB3C	chr5	58578075	58864394
RAB3C_chr5_58578075_58864394	0/0	t0031	8178	1	1	0	0	0	0	copy fasta	RAB3C	chr5	58578075	58864394
RAB3C_chr5_58578075_58864394	0/0	t0032	8176	1	1	0	0	0	0	copy fasta	RAB3C	chr5	58578075	58864394
RAB3C_chr5_58578075_58864394	0/0	t0033	8168	1	0	1	0	0	0	copy fasta	RAB3C	chr5	58578075	58864394
RAB3C_chr5_58578075_58864394	0/0	t0034	8168	1	0	1	0	0	0	copy fasta	RAB3C	chr5	58578075	58864394
RAB3C_chr5_58578075_58864394	0/0	t0035	8168	1	1	0	0	0	0	copy fasta	RAB3C	chr5	58578075	58864394
RAB3C_chr5_58578075_58864394	0/0	t0036	8168	1	0	1	0	0	0	copy fasta	RAB3C	chr5	58578075	58864394
RAB3C_chr5_58578075_58864394	0/0	t0037	8164	1	0	0	1	0	0	copy fasta	RAB3C	chr5	58578075	58864394
RAB3C_chr5_58578075_58864394	0/0	t0038	8156	1	0	1	0	0	0	copy fasta	RAB3C	chr5	58578075	58864394
RAB3C_chr5_58578075_58864394	0/0	t0039	8162	1	0	1	0	0	0	copy fasta	RAB3C	chr5	58578075	58864394
RAB3C_chr5_58578075_58864394	0/0	t0040	8182	1	0	0	0	0	1	copy fasta	RAB3C	chr5	58578075	58864394
RAB3C_chr5_58578075_58864394	0/0	t0041	8182	1	1	0	0	0	0	copy fasta	RAB3C	chr5	58578075	58864394
RAB3C_chr5_58578075_58864394	0/0	t0042	8180	1	0	0	0	0	1	copy fasta	RAB3C	chr5	58578075	58864394
RAB3C_chr5_58578075_58864394	0/0	t0043	8178	1	1	0	0	0	0	copy fasta	RAB3C	chr5	58578075	58864394
RAB3C_chr5_58578075_58864394	0/0	t0044	8174	1	1	0	0	0	0	copy fasta	RAB3C	chr5	58578075	58864394
RAB3C_chr5_58578075_58864394	0/0	t0045	8174	1	1	0	0	0	0	copy fasta	RAB3C	chr5	58578075	58864394
RAB3C_chr5_58578075_58864394	0/0	t0046	8172	1	0	0	0	0	1	copy fasta	RAB3C	chr5	58578075	58864394
RAB3C_chr5_58578075_58864394	0/0	t0047	8168	1	0	0	1	0	0	copy fasta	RAB3C	chr5	58578075	58864394
RAB3C_chr5_58578075_58864394	0/0	t0048	8158	1	0	1	0	0	0	copy fasta	RAB3C	chr5	58578075	58864394
RAB3C_chr5_58578075_58864394	0/0	t0049	8168	1	1	0	0	0	0	copy fasta	RAB3C	chr5	58578075	58864394
RAB3C_chr5_58578075_58864394	0/0	t0050	8174	1	1	0	0	0	0	copy fasta	RAB3C	chr5	58578075	58864394
RAB3C_chr5_58578075_58864394	0/0	t0051	8180	1	0	1	0	0	0	copy fasta	RAB3C	chr5	58578075	58864394
RAB3C_chr5_58578075_58864394	0/0	t0052	8170	1	1	0	0	0	0	copy fasta	RAB3C	chr5	58578075	58864394
RAB3C_chr5_58578075_58864394	0/0	t0053	8166	1	0	0	0	0	1	copy fasta	RAB3C	chr5	58578075	58864394
RAB3C_chr5_58578075_58864394	0/0	t0054	8170	1	0	0	0	0	1	copy fasta	RAB3C	chr5	58578075	58864394
RAB3C_chr5_58578075_58864394	0/0	t0055	8164	1	0	0	1	0	0	copy fasta	RAB3C	chr5	58578075	58864394
RAB3C_chr5_58578075_58864394	0/0	t0056	8160	1	0	0	1	0	0	copy fasta	RAB3C	chr5	58578075	58864394
RAB3C_chr5_58578075_58864394	0/0	t0057	8170	1	1	0	0	0	0	copy fasta	RAB3C	chr5	58578075	58864394
RAB3C_chr5_58578075_58864394	0/0	t0058	8166	1	1	0	0	0	0	copy fasta	RAB3C	chr5	58578075	58864394
RAB3C_chr5_58578075_58864394	0/0	t0059	8174	1	1	0	0	0	0	copy fasta	RAB3C	chr5	58578075	58864394
RAB3C_chr5_58578075_58864394	0/0	t0060	8164	1	0	0	0	0	1	copy fasta	RAB3C	chr5	58578075	58864394
RAB3C_chr5_58578075_58864394	0/0	t0061	8166	1	0	0	0	0	1	copy fasta	RAB3C	chr5	58578075	58864394
RAB3C_chr5_58578075_58864394	0/0	t0062	8166	1	0	1	0	0	0	copy fasta	RAB3C	chr5	58578075	58864394
RAB3C_chr5_58578075_58864394	0/0	t0063	8164	1	0	1	0	0	0	copy fasta	RAB3C	chr5	58578075	58864394
RAB3C_chr5_58578075_58864394	0/0	t0064	8166	1	0	0	0	0	1	copy fasta	RAB3C	chr5	58578075	58864394
RAB3C_chr5_58578075_58864394	0/0	t0065	8178	1	0	0	1	0	0	copy fasta	RAB3C	chr5	58578075	58864394
RAB3C_chr5_58578075_58864394	0/0	t0066	8184	1	0	1	0	0	0	copy fasta	RAB3C	chr5	58578075	58864394
RAB3C_chr5_58578075_58864394	0/0	t0067	8182	1	0	0	1	0	0	copy fasta	RAB3C	chr5	58578075	58864394
RAB3C_chr5_58578075_58864394	0/0	t0068	8180	1	0	0	1	0	0	copy fasta	RAB3C	chr5	58578075	58864394
RAB3C_chr5_58578075_58864394	0/0	t0069	8180	1	0	0	1	0	0	copy fasta	RAB3C	chr5	58578075	58864394
RAB3C_chr5_58578075_58864394	0/0	t0070	8180	1	0	0	1	0	0	copy fasta	RAB3C	chr5	58578075	58864394
RAB3C_chr5_58578075_58864394	0/0	t0071	8178	1	1	0	0	0	0	copy fasta	RAB3C	chr5	58578075	58864394
RAB3C_chr5_58578075_58864394	0/0	t0072	8178	1	1	0	0	0	0	copy fasta	RAB3C	chr5	58578075	58864394
RAB3C_chr5_58578075_58864394	0/0	t0073	8174	1	0	0	1	0	0	copy fasta	RAB3C	chr5	58578075	58864394
RAB3C_chr5_58578075_58864394	0/0	t0074	8174	1	0	0	1	0	0	copy fasta	RAB3C	chr5	58578075	58864394
RAB3C_chr5_58578075_58864394	0/0	t0075	8182	1	1	0	0	0	0	copy fasta	RAB3C	chr5	58578075	58864394
RAB3C_chr5_58578075_58864394	0/0	t0076	8182	1	0	0	1	0	0	copy fasta	RAB3C	chr5	58578075	58864394
RAB3C_chr5_58578075_58864394	0/0	t0077	8180	1	0	0	0	1	0	copy fasta	RAB3C	chr5	58578075	58864394