JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RAB3C_chr5_58578075_58864394	0/0	t0078	8190	1	0	0	0	1	0	copy fasta	RAB3C	chr5	58578075	58864394
RAB3C_chr5_58578075_58864394	0/0	t0079	8186	1	0	1	0	0	0	copy fasta	RAB3C	chr5	58578075	58864394
RAB3C_chr5_58578075_58864394	0/0	t0080	8182	1	0	0	1	0	0	copy fasta	RAB3C	chr5	58578075	58864394
RAB3C_chr5_58578075_58864394	0/0	t0081	8180	1	1	0	0	0	0	copy fasta	RAB3C	chr5	58578075	58864394
RAB3C_chr5_58578075_58864394	0/0	t0082	8180	1	1	0	0	0	0	copy fasta	RAB3C	chr5	58578075	58864394
RAB3C_chr5_58578075_58864394	0/0	t0083	8178	1	1	0	0	0	0	copy fasta	RAB3C	chr5	58578075	58864394
RAB3C_chr5_58578075_58864394	0/0	t0084	8188	1	1	0	0	0	0	copy fasta	RAB3C	chr5	58578075	58864394
RAB3D_chr19_11317068_11344657	1/1	t0001	3581	227	25	51	113	14	22	copy fasta	RAB3D	chr19	11317068	11344657
RAB3D_chr19_11317068_11344657	0/0	t0002	3561	36	8	2	23	1	2	copy fasta	RAB3D	chr19	11317068	11344657
RAB3D_chr19_11317068_11344657	0/0	t0003	3581	25	0	6	18	0	1	copy fasta	RAB3D	chr19	11317068	11344657
RAB3D_chr19_11317068_11344657	0/0	t0004	3562	12	9	0	3	0	0	copy fasta	RAB3D	chr19	11317068	11344657
RAB3D_chr19_11317068_11344657	0/0	t0005	3561	8	8	0	0	0	0	copy fasta	RAB3D	chr19	11317068	11344657
RAB3D_chr19_11317068_11344657	0/0	t0006	3580	8	2	4	1	0	1	copy fasta	RAB3D	chr19	11317068	11344657
RAB3D_chr19_11317068_11344657	0/0	t0007	3561	8	7	1	0	0	0	copy fasta	RAB3D	chr19	11317068	11344657
RAB3D_chr19_11317068_11344657	0/0	t0008	3561	7	7	0	0	0	0	copy fasta	RAB3D	chr19	11317068	11344657
RAB3D_chr19_11317068_11344657	0/0	t0009	3582	7	3	0	3	0	1	copy fasta	RAB3D	chr19	11317068	11344657
RAB3D_chr19_11317068_11344657	0/0	t0010	3575	6	0	0	6	0	0	copy fasta	RAB3D	chr19	11317068	11344657
RAB3D_chr19_11317068_11344657	0/0	t0011	3567	5	4	1	0	0	0	copy fasta	RAB3D	chr19	11317068	11344657
RAB3D_chr19_11317068_11344657	0/0	t0012	3575	5	5	0	0	0	0	copy fasta	RAB3D	chr19	11317068	11344657
RAB3D_chr19_11317068_11344657	0/0	t0013	3581	5	0	0	5	0	0	copy fasta	RAB3D	chr19	11317068	11344657
RAB3D_chr19_11317068_11344657	0/0	t0014	3561	4	3	1	0	0	0	copy fasta	RAB3D	chr19	11317068	11344657
RAB3D_chr19_11317068_11344657	0/0	t0015	3575	4	4	0	0	0	0	copy fasta	RAB3D	chr19	11317068	11344657
RAB3D_chr19_11317068_11344657	0/0	t0016	3578	4	0	2	0	0	2	copy fasta	RAB3D	chr19	11317068	11344657
RAB3D_chr19_11317068_11344657	0/0	t0017	3560	2	0	1	1	0	0	copy fasta	RAB3D	chr19	11317068	11344657
RAB3D_chr19_11317068_11344657	0/0	t0018	3561	2	2	0	0	0	0	copy fasta	RAB3D	chr19	11317068	11344657
RAB3D_chr19_11317068_11344657	0/0	t0019	3561	2	1	0	1	0	0	copy fasta	RAB3D	chr19	11317068	11344657
RAB3D_chr19_11317068_11344657	0/0	t0020	3581	2	0	0	1	0	1	copy fasta	RAB3D	chr19	11317068	11344657
RAB3D_chr19_11317068_11344657	0/0	t0021	3581	2	0	0	2	0	0	copy fasta	RAB3D	chr19	11317068	11344657
RAB3D_chr19_11317068_11344657	0/0	t0022	3581	1	0	0	1	0	0	copy fasta	RAB3D	chr19	11317068	11344657
RAB3D_chr19_11317068_11344657	0/0	t0023	3561	1	0	0	1	0	0	copy fasta	RAB3D	chr19	11317068	11344657
RAB3D_chr19_11317068_11344657	0/0	t0024	3569	1	0	0	1	0	0	copy fasta	RAB3D	chr19	11317068	11344657
RAB3D_chr19_11317068_11344657	0/0	t0025	3561	1	1	0	0	0	0	copy fasta	RAB3D	chr19	11317068	11344657
RAB3D_chr19_11317068_11344657	0/0	t0026	3560	1	1	0	0	0	0	copy fasta	RAB3D	chr19	11317068	11344657
RAB3D_chr19_11317068_11344657	0/0	t0027	3561	1	1	0	0	0	0	copy fasta	RAB3D	chr19	11317068	11344657
RAB3D_chr19_11317068_11344657	0/0	t0028	3560	1	0	1	0	0	0	copy fasta	RAB3D	chr19	11317068	11344657
RAB3D_chr19_11317068_11344657	0/0	t0029	3567	1	1	0	0	0	0	copy fasta	RAB3D	chr19	11317068	11344657
RAB3D_chr19_11317068_11344657	0/0	t0030	3568	1	1	0	0	0	0	copy fasta	RAB3D	chr19	11317068	11344657
RAB3D_chr19_11317068_11344657	0/0	t0031	3561	1	0	1	0	0	0	copy fasta	RAB3D	chr19	11317068	11344657
RAB3D_chr19_11317068_11344657	0/0	t0032	3561	1	1	0	0	0	0	copy fasta	RAB3D	chr19	11317068	11344657
RAB3D_chr19_11317068_11344657	0/0	t0033	3575	1	0	0	0	0	1	copy fasta	RAB3D	chr19	11317068	11344657
RAB3D_chr19_11317068_11344657	0/0	t0034	3576	1	0	0	0	0	1	copy fasta	RAB3D	chr19	11317068	11344657
RAB3D_chr19_11317068_11344657	0/0	t0035	3581	1	0	1	0	0	0	copy fasta	RAB3D	chr19	11317068	11344657
RAB3D_chr19_11317068_11344657	0/0	t0036	3580	1	0	0	1	0	0	copy fasta	RAB3D	chr19	11317068	11344657
RAB3D_chr19_11317068_11344657	0/0	t0037	3581	1	1	0	0	0	0	copy fasta	RAB3D	chr19	11317068	11344657
RAB3D_chr19_11317068_11344657	0/0	t0038	3581	1	0	0	1	0	0	copy fasta	RAB3D	chr19	11317068	11344657
RAB3D_chr19_11317068_11344657	0/0	t0039	3576	1	0	0	1	0	0	copy fasta	RAB3D	chr19	11317068	11344657
RAB3D_chr19_11317068_11344657	0/0	t0040	3575	1	0	0	1	0	0	copy fasta	RAB3D	chr19	11317068	11344657
RAB3D_chr19_11317068_11344657	0/0	t0041	3581	1	0	0	0	0	1	copy fasta	RAB3D	chr19	11317068	11344657
RAB3D_chr19_11317068_11344657	0/0	t0042	3581	1	0	0	1	0	0	copy fasta	RAB3D	chr19	11317068	11344657
RAB3D_chr19_11317068_11344657	0/0	t0043	3581	1	1	0	0	0	0	copy fasta	RAB3D	chr19	11317068	11344657