JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RAB3GAP2_chr1_220143293_220277453	0/0	t0014	3075	2	2	0	0	0	0	copy fasta	RAB3GAP2	chr1	220143293	220277453
RAB3GAP2_chr1_220143293_220277453	0/0	t0015	3074	2	1	1	0	0	0	copy fasta	RAB3GAP2	chr1	220143293	220277453
RAB3GAP2_chr1_220143293_220277453	0/0	t0016	3070	2	0	0	1	0	1	copy fasta	RAB3GAP2	chr1	220143293	220277453
RAB3GAP2_chr1_220143293_220277453	0/0	t0017	3073	2	2	0	0	0	0	copy fasta	RAB3GAP2	chr1	220143293	220277453
RAB3GAP2_chr1_220143293_220277453	0/0	t0018	3075	1	0	0	1	0	0	copy fasta	RAB3GAP2	chr1	220143293	220277453
RAB3GAP2_chr1_220143293_220277453	0/0	t0019	3073	1	0	1	0	0	0	copy fasta	RAB3GAP2	chr1	220143293	220277453
RAB3GAP2_chr1_220143293_220277453	0/0	t0020	3072	1	0	0	1	0	0	copy fasta	RAB3GAP2	chr1	220143293	220277453
RAB3GAP2_chr1_220143293_220277453	0/0	t0021	3076	1	0	1	0	0	0	copy fasta	RAB3GAP2	chr1	220143293	220277453
RAB3GAP2_chr1_220143293_220277453	0/0	t0022	3075	1	1	0	0	0	0	copy fasta	RAB3GAP2	chr1	220143293	220277453
RAB3GAP2_chr1_220143293_220277453	0/0	t0023	3077	1	0	0	1	0	0	copy fasta	RAB3GAP2	chr1	220143293	220277453
RAB3GAP2_chr1_220143293_220277453	0/0	t0024	3074	1	1	0	0	0	0	copy fasta	RAB3GAP2	chr1	220143293	220277453
RAB3GAP2_chr1_220143293_220277453	0/0	t0025	3061	1	0	0	1	0	0	copy fasta	RAB3GAP2	chr1	220143293	220277453
RAB3GAP2_chr1_220143293_220277453	0/0	t0026	3074	1	1	0	0	0	0	copy fasta	RAB3GAP2	chr1	220143293	220277453
RAB3GAP2_chr1_220143293_220277453	0/0	t0027	3074	1	1	0	0	0	0	copy fasta	RAB3GAP2	chr1	220143293	220277453
RAB3GAP2_chr1_220143293_220277453	0/0	t0028	3074	1	1	0	0	0	0	copy fasta	RAB3GAP2	chr1	220143293	220277453
RAB3GAP2_chr1_220143293_220277453	0/0	t0029	3075	1	0	1	0	0	0	copy fasta	RAB3GAP2	chr1	220143293	220277453
RAB3GAP2_chr1_220143293_220277453	0/0	t0030	3074	1	1	0	0	0	0	copy fasta	RAB3GAP2	chr1	220143293	220277453
RAB3GAP2_chr1_220143293_220277453	0/0	t0031	3073	1	0	0	0	0	1	copy fasta	RAB3GAP2	chr1	220143293	220277453
RAB3GAP2_chr1_220143293_220277453	0/0	t0032	3070	1	0	0	1	0	0	copy fasta	RAB3GAP2	chr1	220143293	220277453
RAB3GAP2_chr1_220143293_220277453	0/0	t0033	3073	1	0	1	0	0	0	copy fasta	RAB3GAP2	chr1	220143293	220277453
RAB3GAP2_chr1_220143293_220277453	0/0	t0034	3074	1	1	0	0	0	0	copy fasta	RAB3GAP2	chr1	220143293	220277453
RAB3IL1_chr11_61892301_61922566	0/1	t0001	1177	239	31	37	136	11	23	copy fasta	RAB3IL1	chr11	61892301	61922566
RAB3IL1_chr11_61892301_61922566	1/0	t0002	1177	84	52	11	12	1	7	copy fasta	RAB3IL1	chr11	61892301	61922566
RAB3IL1_chr11_61892301_61922566	0/0	t0003	1177	33	6	18	4	2	3	copy fasta	RAB3IL1	chr11	61892301	61922566
RAB3IL1_chr11_61892301_61922566	0/0	t0004	1177	20	3	7	3	2	5	copy fasta	RAB3IL1	chr11	61892301	61922566
RAB3IL1_chr11_61892301_61922566	0/0	t0005	1177	5	4	1	0	0	0	copy fasta	RAB3IL1	chr11	61892301	61922566
RAB3IL1_chr11_61892301_61922566	0/0	t0006	1177	4	0	0	4	0	0	copy fasta	RAB3IL1	chr11	61892301	61922566
RAB3IL1_chr11_61892301_61922566	0/0	t0007	1177	2	0	0	2	0	0	copy fasta	RAB3IL1	chr11	61892301	61922566
RAB3IL1_chr11_61892301_61922566	0/0	t0008	1177	2	0	2	0	0	0	copy fasta	RAB3IL1	chr11	61892301	61922566
RAB3IL1_chr11_61892301_61922566	0/0	t0009	1177	1	1	0	0	0	0	copy fasta	RAB3IL1	chr11	61892301	61922566
RAB3IL1_chr11_61892301_61922566	0/0	t0010	1177	1	0	0	1	0	0	copy fasta	RAB3IL1	chr11	61892301	61922566
RAB3IL1_chr11_61892301_61922566	0/0	t0011	1177	1	1	0	0	0	0	copy fasta	RAB3IL1	chr11	61892301	61922566
RAB3IP_chr12_69733860_69828199	0/0	t0001	7961	46	4	15	23	0	4	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	t0002	7970	19	3	3	10	0	3	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	t0003	7971	15	0	1	12	0	2	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	t0004	7948	14	0	2	6	1	5	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	t0005	7963	12	0	0	12	0	0	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/1	t0006	7953	10	0	4	0	3	2	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	t0007	7948	9	9	0	0	0	0	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	t0008	7968	8	1	3	2	2	0	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	t0009	7972	7	0	3	2	1	1	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	t0010	7970	6	0	0	6	0	0	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	t0011	7969	6	0	0	6	0	0	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	t0012	7974	6	2	0	3	1	0	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	t0013	7973	5	2	0	2	0	1	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	t0014	7967	5	0	1	4	0	0	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	t0015	7965	5	5	0	0	0	0	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	1/0	t0016	7951	4	3	0	0	0	0	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	t0017	7976	4	1	1	2	0	0	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	t0018	7965	4	3	0	1	0	0	copy fasta	RAB3IP	chr12	69733860	69828199