JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RAB3IP_chr12_69733860_69828199	0/0	t0019	7944	3	0	0	3	0	0	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	t0020	7969	3	3	0	0	0	0	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	t0021	7961	3	3	0	0	0	0	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	t0022	7977	3	0	1	2	0	0	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	t0023	7972	3	0	0	3	0	0	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	t0024	7955	3	0	0	3	0	0	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	t0025	7969	3	2	1	0	0	0	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	t0026	7970	3	1	2	0	0	0	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	t0027	7970	3	0	0	3	0	0	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	t0028	7965	3	2	1	0	0	0	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	t0029	7960	3	0	1	0	2	0	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	t0030	7957	2	0	0	2	0	0	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	t0031	7956	2	0	0	2	0	0	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	t0032	7961	2	0	1	0	0	1	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	t0033	7945	2	0	0	2	0	0	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	t0034	7967	2	2	0	0	0	0	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	t0035	7967	2	2	0	0	0	0	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	t0036	7980	2	0	0	2	0	0	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	t0037	7975	2	0	0	2	0	0	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	t0038	7974	2	0	0	2	0	0	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	t0039	8013	2	0	0	2	0	0	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	t0040	7965	2	0	2	0	0	0	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	t0041	7957	2	0	0	2	0	0	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	t0042	7967	2	2	0	0	0	0	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	t0043	7949	2	0	0	1	0	1	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	t0044	7971	2	0	0	2	0	0	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	t0045	7965	2	2	0	0	0	0	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	t0046	7978	2	0	0	1	0	1	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	t0047	7975	2	0	0	2	0	0	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	t0048	7973	2	0	1	1	0	0	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	t0049	7970	2	0	0	2	0	0	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	t0050	7968	2	0	0	2	0	0	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	t0051	7966	2	1	0	0	1	0	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	t0052	7963	2	0	1	0	0	1	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	t0053	7962	2	0	2	0	0	0	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	t0054	7962	2	0	1	1	0	0	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	t0055	7969	2	0	2	0	0	0	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	t0056	7963	2	0	1	1	0	0	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	t0057	7962	2	0	0	2	0	0	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	t0058	7962	2	0	0	2	0	0	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	t0059	7961	2	0	2	0	0	0	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	t0060	7960	1	0	0	1	0	0	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	t0061	7958	1	0	0	1	0	0	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	t0062	7969	1	0	1	0	0	0	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	t0063	7967	1	0	1	0	0	0	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	t0064	7965	1	0	0	0	1	0	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	t0065	7962	1	1	0	0	0	0	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	t0066	7971	1	0	0	1	0	0	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	t0067	7964	1	0	1	0	0	0	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	t0068	7966	1	1	0	0	0	0	copy fasta	RAB3IP	chr12	69733860	69828199