JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RAB3IP_chr12_69733860_69828199	0/0	t0169	7964	1	0	0	0	0	1	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	t0170	7962	1	0	0	1	0	0	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	t0171	7962	1	0	0	0	1	0	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	t0172	7961	1	0	0	0	0	1	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	t0173	7961	1	0	1	0	0	0	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	t0174	7961	1	0	0	1	0	0	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	t0175	7958	1	0	0	0	0	1	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	t0176	7960	1	0	0	1	0	0	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	t0177	7960	1	0	0	0	0	1	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	t0178	7961	1	0	1	0	0	0	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	t0179	7961	1	0	0	1	0	0	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	t0180	7960	1	0	0	1	0	0	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	t0181	7959	1	0	1	0	0	0	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	t0182	7967	1	1	0	0	0	0	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	t0183	7967	1	1	0	0	0	0	copy fasta	RAB3IP	chr12	69733860	69828199
RAB40AL_chrX_102932272_102943300	1/1	t0001	193	306	67	45	149	11	32	copy fasta	RAB40AL	chrX	102932272	102943300
RAB40AL_chrX_102932272_102943300	0/0	t0002	193	8	8	0	0	0	0	copy fasta	RAB40AL	chrX	102932272	102943300
RAB40AL_chrX_102932272_102943300	0/0	t0003	193	1	0	0	1	0	0	copy fasta	RAB40AL	chrX	102932272	102943300
RAB40AL_chrX_102932272_102943300	0/0	t0004	194	1	0	0	1	0	0	copy fasta	RAB40AL	chrX	102932272	102943300
RAB40A_chrX_103494130_103524489	1/1	t0001	1136	247	61	44	104	11	25	copy fasta	RAB40A	chrX	103494130	103524489
RAB40A_chrX_103494130_103524489	0/0	t0002	1134	14	13	1	0	0	0	copy fasta	RAB40A	chrX	103494130	103524489
RAB40A_chrX_103494130_103524489	0/0	t0003	1136	2	2	0	0	0	0	copy fasta	RAB40A	chrX	103494130	103524489
RAB40A_chrX_103494130_103524489	0/0	t0004	1135	1	0	0	1	0	0	copy fasta	RAB40A	chrX	103494130	103524489
RAB40A_chrX_103494130_103524489	0/0	t0005	1136	1	0	0	0	0	1	copy fasta	RAB40A	chrX	103494130	103524489
RAB40A_chrX_103494130_103524489	0/0	t0006	1139	1	0	0	1	0	0	copy fasta	RAB40A	chrX	103494130	103524489
RAB40B_chr17_82649973_82703698	0/0	t0001	2993	72	18	9	28	7	10	copy fasta	RAB40B	chr17	82649973	82703698
RAB40B_chr17_82649973_82703698	0/1	t0002	2992	60	4	28	11	5	11	copy fasta	RAB40B	chr17	82649973	82703698
RAB40B_chr17_82649973_82703698	0/0	t0003	2993	54	6	11	23	4	10	copy fasta	RAB40B	chr17	82649973	82703698
RAB40B_chr17_82649973_82703698	0/0	t0004	2996	40	12	6	20	1	1	copy fasta	RAB40B	chr17	82649973	82703698
RAB40B_chr17_82649973_82703698	0/0	t0005	2992	22	5	2	11	1	3	copy fasta	RAB40B	chr17	82649973	82703698
RAB40B_chr17_82649973_82703698	0/0	t0006	2993	8	8	0	0	0	0	copy fasta	RAB40B	chr17	82649973	82703698
RAB40B_chr17_82649973_82703698	0/0	t0007	2991	6	6	0	0	0	0	copy fasta	RAB40B	chr17	82649973	82703698
RAB40B_chr17_82649973_82703698	0/0	t0008	2993	6	0	0	5	0	1	copy fasta	RAB40B	chr17	82649973	82703698
RAB40B_chr17_82649973_82703698	0/0	t0009	2993	5	0	5	0	0	0	copy fasta	RAB40B	chr17	82649973	82703698
RAB40B_chr17_82649973_82703698	0/0	t0010	2993	5	1	1	3	0	0	copy fasta	RAB40B	chr17	82649973	82703698
RAB40B_chr17_82649973_82703698	0/0	t0011	2993	5	0	0	5	0	0	copy fasta	RAB40B	chr17	82649973	82703698
RAB40B_chr17_82649973_82703698	0/0	t0012	2993	3	2	0	0	0	1	copy fasta	RAB40B	chr17	82649973	82703698
RAB40B_chr17_82649973_82703698	0/0	t0013	2991	3	0	0	3	0	0	copy fasta	RAB40B	chr17	82649973	82703698
RAB40B_chr17_82649973_82703698	0/0	t0014	2993	2	0	1	1	0	0	copy fasta	RAB40B	chr17	82649973	82703698
RAB40B_chr17_82649973_82703698	0/0	t0015	2994	2	1	0	1	0	0	copy fasta	RAB40B	chr17	82649973	82703698
RAB40B_chr17_82649973_82703698	0/0	t0016	2992	2	0	0	2	0	0	copy fasta	RAB40B	chr17	82649973	82703698
RAB40B_chr17_82649973_82703698	0/0	t0017	2991	2	1	1	0	0	0	copy fasta	RAB40B	chr17	82649973	82703698
RAB40B_chr17_82649973_82703698	0/0	t0018	2993	2	0	0	2	0	0	copy fasta	RAB40B	chr17	82649973	82703698
RAB40B_chr17_82649973_82703698	0/0	t0019	2992	2	0	2	0	0	0	copy fasta	RAB40B	chr17	82649973	82703698
RAB40B_chr17_82649973_82703698	0/0	t0020	2993	2	0	0	2	0	0	copy fasta	RAB40B	chr17	82649973	82703698
RAB40B_chr17_82649973_82703698	0/0	t0021	2994	2	0	2	0	0	0	copy fasta	RAB40B	chr17	82649973	82703698
RAB40B_chr17_82649973_82703698	0/0	t0022	2992	2	0	0	2	0	0	copy fasta	RAB40B	chr17	82649973	82703698
RAB40B_chr17_82649973_82703698	0/0	t0023	2993	1	0	0	0	0	1	copy fasta	RAB40B	chr17	82649973	82703698
RAB40B_chr17_82649973_82703698	0/0	t0024	2993	1	0	0	0	0	1	copy fasta	RAB40B	chr17	82649973	82703698
RAB40B_chr17_82649973_82703698	0/0	t0025	2993	1	0	0	0	0	1	copy fasta	RAB40B	chr17	82649973	82703698