JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RAB40B_chr17_82649973_82703698	0/0	t0026	2994	1	1	0	0	0	0	copy fasta	RAB40B	chr17	82649973	82703698
RAB40B_chr17_82649973_82703698	0/0	t0027	2997	1	0	0	1	0	0	copy fasta	RAB40B	chr17	82649973	82703698
RAB40B_chr17_82649973_82703698	0/0	t0028	2994	1	1	0	0	0	0	copy fasta	RAB40B	chr17	82649973	82703698
RAB40B_chr17_82649973_82703698	0/0	t0029	2993	1	0	0	0	0	1	copy fasta	RAB40B	chr17	82649973	82703698
RAB40B_chr17_82649973_82703698	0/0	t0030	2993	1	1	0	0	0	0	copy fasta	RAB40B	chr17	82649973	82703698
RAB40B_chr17_82649973_82703698	0/0	t0031	2992	1	0	0	1	0	0	copy fasta	RAB40B	chr17	82649973	82703698
RAB40B_chr17_82649973_82703698	0/0	t0032	2991	1	0	0	1	0	0	copy fasta	RAB40B	chr17	82649973	82703698
RAB40B_chr17_82649973_82703698	0/0	t0033	2992	1	0	1	0	0	0	copy fasta	RAB40B	chr17	82649973	82703698
RAB40B_chr17_82649973_82703698	0/0	t0034	2993	1	1	0	0	0	0	copy fasta	RAB40B	chr17	82649973	82703698
RAB40B_chr17_82649973_82703698	0/0	t0035	2993	1	0	0	1	0	0	copy fasta	RAB40B	chr17	82649973	82703698
RAB40B_chr17_82649973_82703698	0/0	t0036	2992	1	0	0	1	0	0	copy fasta	RAB40B	chr17	82649973	82703698
RAB40B_chr17_82649973_82703698	0/0	t0037	2991	1	1	0	0	0	0	copy fasta	RAB40B	chr17	82649973	82703698
RAB40B_chr17_82649973_82703698	0/0	t0038	2992	1	0	1	0	0	0	copy fasta	RAB40B	chr17	82649973	82703698
RAB40B_chr17_82649973_82703698	0/0	t0039	2992	1	0	0	0	0	1	copy fasta	RAB40B	chr17	82649973	82703698
RAB40B_chr17_82649973_82703698	0/0	t0040	2992	1	0	0	0	0	1	copy fasta	RAB40B	chr17	82649973	82703698
RAB40B_chr17_82649973_82703698	0/0	t0041	2992	1	0	0	1	0	0	copy fasta	RAB40B	chr17	82649973	82703698
RAB40B_chr17_82649973_82703698	0/0	t0042	2992	1	1	0	0	0	0	copy fasta	RAB40B	chr17	82649973	82703698
RAB40B_chr17_82649973_82703698	0/0	t0043	2996	1	1	0	0	0	0	copy fasta	RAB40B	chr17	82649973	82703698
RAB40B_chr17_82649973_82703698	0/0	t0044	2993	1	0	1	0	0	0	copy fasta	RAB40B	chr17	82649973	82703698
RAB40B_chr17_82649973_82703698	0/0	t0045	2991	1	0	1	0	0	0	copy fasta	RAB40B	chr17	82649973	82703698
RAB40B_chr17_82649973_82703698	0/0	t0046	2993	1	0	0	0	0	1	copy fasta	RAB40B	chr17	82649973	82703698
RAB40B_chr17_82649973_82703698	1/0	t0047	2993	1	0	0	0	0	0	copy fasta	RAB40B	chr17	82649973	82703698
RAB40B_chr17_82649973_82703698	0/0	t0048	2992	1	1	0	0	0	0	copy fasta	RAB40B	chr17	82649973	82703698
RAB40B_chr17_82649973_82703698	0/0	t0049	2993	1	1	0	0	0	0	copy fasta	RAB40B	chr17	82649973	82703698
RAB40B_chr17_82649973_82703698	0/0	t0050	2993	1	0	0	0	0	1	copy fasta	RAB40B	chr17	82649973	82703698
RAB40B_chr17_82649973_82703698	0/0	t0051	2993	1	0	0	1	0	0	copy fasta	RAB40B	chr17	82649973	82703698
RAB40B_chr17_82649973_82703698	0/0	t0052	2993	1	0	0	0	0	1	copy fasta	RAB40B	chr17	82649973	82703698
RAB40B_chr17_82649973_82703698	0/0	t0053	2993	1	1	0	0	0	0	copy fasta	RAB40B	chr17	82649973	82703698
RAB40C_chr16_585066_634268	1/1	t0001	1873	137	41	33	46	4	11	copy fasta	RAB40C	chr16	585066	634268
RAB40C_chr16_585066_634268	0/0	t0002	1873	105	3	25	56	3	18	copy fasta	RAB40C	chr16	585066	634268
RAB40C_chr16_585066_634268	0/0	t0003	1873	48	16	5	11	3	13	copy fasta	RAB40C	chr16	585066	634268
RAB40C_chr16_585066_634268	0/0	t0004	1870	10	8	2	0	0	0	copy fasta	RAB40C	chr16	585066	634268
RAB40C_chr16_585066_634268	0/0	t0005	1873	5	1	1	2	0	1	copy fasta	RAB40C	chr16	585066	634268
RAB40C_chr16_585066_634268	0/0	t0006	1873	5	4	1	0	0	0	copy fasta	RAB40C	chr16	585066	634268
RAB40C_chr16_585066_634268	0/0	t0007	1873	5	5	0	0	0	0	copy fasta	RAB40C	chr16	585066	634268
RAB40C_chr16_585066_634268	0/0	t0008	1870	2	2	0	0	0	0	copy fasta	RAB40C	chr16	585066	634268
RAB40C_chr16_585066_634268	0/0	t0009	1873	2	0	0	0	0	2	copy fasta	RAB40C	chr16	585066	634268
RAB40C_chr16_585066_634268	0/0	t0010	1873	2	2	0	0	0	0	copy fasta	RAB40C	chr16	585066	634268
RAB40C_chr16_585066_634268	0/0	t0011	1873	2	0	0	2	0	0	copy fasta	RAB40C	chr16	585066	634268
RAB40C_chr16_585066_634268	0/0	t0012	1870	2	2	0	0	0	0	copy fasta	RAB40C	chr16	585066	634268
RAB40C_chr16_585066_634268	0/0	t0013	1870	2	2	0	0	0	0	copy fasta	RAB40C	chr16	585066	634268
RAB40C_chr16_585066_634268	0/0	t0014	1873	2	0	0	2	0	0	copy fasta	RAB40C	chr16	585066	634268
RAB40C_chr16_585066_634268	0/0	t0015	1873	2	0	2	0	0	0	copy fasta	RAB40C	chr16	585066	634268
RAB40C_chr16_585066_634268	0/0	t0016	1873	1	0	0	1	0	0	copy fasta	RAB40C	chr16	585066	634268
RAB40C_chr16_585066_634268	0/0	t0017	1873	1	0	0	1	0	0	copy fasta	RAB40C	chr16	585066	634268
RAB40C_chr16_585066_634268	0/0	t0018	1873	1	0	0	1	0	0	copy fasta	RAB40C	chr16	585066	634268
RAB40C_chr16_585066_634268	0/0	t0019	1873	1	0	0	0	0	1	copy fasta	RAB40C	chr16	585066	634268
RAB40C_chr16_585066_634268	0/0	t0020	1873	1	1	0	0	0	0	copy fasta	RAB40C	chr16	585066	634268
RAB40C_chr16_585066_634268	0/0	t0021	1870	1	1	0	0	0	0	copy fasta	RAB40C	chr16	585066	634268
RAB40C_chr16_585066_634268	0/0	t0022	1873	1	0	0	1	0	0	copy fasta	RAB40C	chr16	585066	634268