JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RAB40C_chr16_585066_634268	0/0	t0023	1870	1	1	0	0	0	0	copy fasta	RAB40C	chr16	585066	634268
RAB40C_chr16_585066_634268	0/0	t0024	1873	1	0	0	1	0	0	copy fasta	RAB40C	chr16	585066	634268
RAB40C_chr16_585066_634268	0/0	t0025	1873	1	0	1	0	0	0	copy fasta	RAB40C	chr16	585066	634268
RAB40C_chr16_585066_634268	0/0	t0026	1873	1	0	0	0	1	0	copy fasta	RAB40C	chr16	585066	634268
RAB40C_chr16_585066_634268	0/0	t0027	1873	1	0	0	0	1	0	copy fasta	RAB40C	chr16	585066	634268
RAB40C_chr16_585066_634268	0/0	t0028	1873	1	1	0	0	0	0	copy fasta	RAB40C	chr16	585066	634268
RAB40C_chr16_585066_634268	0/0	t0029	1873	1	1	0	0	0	0	copy fasta	RAB40C	chr16	585066	634268
RAB40C_chr16_585066_634268	0/0	t0030	1873	1	0	0	1	0	0	copy fasta	RAB40C	chr16	585066	634268
RAB40C_chr16_585066_634268	0/0	t0031	1873	1	1	0	0	0	0	copy fasta	RAB40C	chr16	585066	634268
RAB40C_chr16_585066_634268	0/0	t0032	1873	1	0	0	1	0	0	copy fasta	RAB40C	chr16	585066	634268
RAB40C_chr16_585066_634268	0/0	t0033	1889	1	1	0	0	0	0	copy fasta	RAB40C	chr16	585066	634268
RAB40C_chr16_585066_634268	0/0	t0034	1873	1	1	0	0	0	0	copy fasta	RAB40C	chr16	585066	634268
RAB41_chrX_70277172_70290002	0/1	t0001	406	238	30	42	124	10	31	copy fasta	RAB41	chrX	70277172	70290002
RAB41_chrX_70277172_70290002	0/0	t0002	406	25	21	2	0	1	1	copy fasta	RAB41	chrX	70277172	70290002
RAB41_chrX_70277172_70290002	1/0	t0003	406	15	7	3	0	2	2	copy fasta	RAB41	chrX	70277172	70290002
RAB41_chrX_70277172_70290002	0/0	t0004	406	13	0	0	13	0	0	copy fasta	RAB41	chrX	70277172	70290002
RAB41_chrX_70277172_70290002	0/0	t0005	406	7	7	0	0	0	0	copy fasta	RAB41	chrX	70277172	70290002
RAB41_chrX_70277172_70290002	0/0	t0006	406	6	5	1	0	0	0	copy fasta	RAB41	chrX	70277172	70290002
RAB41_chrX_70277172_70290002	0/0	t0007	407	4	4	0	0	0	0	copy fasta	RAB41	chrX	70277172	70290002
RAB41_chrX_70277172_70290002	0/0	t0008	406	2	2	0	0	0	0	copy fasta	RAB41	chrX	70277172	70290002
RAB41_chrX_70277172_70290002	0/0	t0009	406	2	0	0	2	0	0	copy fasta	RAB41	chrX	70277172	70290002
RAB41_chrX_70277172_70290002	0/0	t0010	408	1	0	0	1	0	0	copy fasta	RAB41	chrX	70277172	70290002
RAB41_chrX_70277172_70290002	0/0	t0011	406	1	0	1	0	0	0	copy fasta	RAB41	chrX	70277172	70290002
RAB42_chr1_28587265_28600449	0/0	t0001	1580	281	76	48	124	7	26	copy fasta	RAB42	chr1	28587265	28600449
RAB42_chr1_28587265_28600449	0/0	t0002	1580	55	5	20	14	8	8	copy fasta	RAB42	chr1	28587265	28600449
RAB42_chr1_28587265_28600449	0/0	t0003	1580	12	1	6	0	1	4	copy fasta	RAB42	chr1	28587265	28600449
RAB42_chr1_28587265_28600449	0/0	t0004	1580	7	1	2	0	1	3	copy fasta	RAB42	chr1	28587265	28600449
RAB42_chr1_28587265_28600449	0/0	t0005	1580	4	1	0	1	1	1	copy fasta	RAB42	chr1	28587265	28600449
RAB42_chr1_28587265_28600449	0/0	t0006	1581	3	0	1	2	0	0	copy fasta	RAB42	chr1	28587265	28600449
RAB42_chr1_28587265_28600449	0/0	t0007	1581	2	0	2	0	0	0	copy fasta	RAB42	chr1	28587265	28600449
RAB42_chr1_28587265_28600449	0/0	t0008	1553	2	0	0	2	0	0	copy fasta	RAB42	chr1	28587265	28600449
RAB42_chr1_28587265_28600449	0/0	t0009	1580	1	1	0	0	0	0	copy fasta	RAB42	chr1	28587265	28600449
RAB42_chr1_28587265_28600449	0/0	t0010	1581	1	1	0	0	0	0	copy fasta	RAB42	chr1	28587265	28600449
RAB42_chr1_28587265_28600449	0/0	t0011	1580	1	1	0	0	0	0	copy fasta	RAB42	chr1	28587265	28600449
RAB42_chr1_28587265_28600449	0/0	t0012	1580	1	1	0	0	0	0	copy fasta	RAB42	chr1	28587265	28600449
RAB42_chr1_28587265_28600449	0/0	t0013	1580	1	1	0	0	0	0	copy fasta	RAB42	chr1	28587265	28600449
RAB42_chr1_28587265_28600449	0/0	t0014	1580	1	0	0	0	0	1	copy fasta	RAB42	chr1	28587265	28600449
RAB42_chr1_28587265_28600449	0/0	t0015	1580	1	1	0	0	0	0	copy fasta	RAB42	chr1	28587265	28600449
RAB42_chr1_28587265_28600449	0/0	t0016	1580	1	1	0	0	0	0	copy fasta	RAB42	chr1	28587265	28600449
RAB42_chr1_28587265_28600449	0/0	t0017	1580	1	0	1	0	0	0	copy fasta	RAB42	chr1	28587265	28600449
RAB42_chr1_28587265_28600449	0/0	t0018	1580	1	0	0	1	0	0	copy fasta	RAB42	chr1	28587265	28600449
RAB42_chr1_28587265_28600449	0/0	t0019	1580	1	1	0	0	0	0	copy fasta	RAB42	chr1	28587265	28600449
RAB42_chr1_28587265_28600449	0/0	t0020	1580	1	0	0	0	0	1	copy fasta	RAB42	chr1	28587265	28600449
RAB43_chr3_129082572_129126804	0/0	t0001	3841	132	24	35	56	5	12	copy fasta	RAB43	chr3	129082572	129126804
RAB43_chr3_129082572_129126804	0/0	t0002	3841	34	27	7	0	0	0	copy fasta	RAB43	chr3	129082572	129126804
RAB43_chr3_129082572_129126804	0/0	t0003	3841	30	3	0	22	0	5	copy fasta	RAB43	chr3	129082572	129126804
RAB43_chr3_129082572_129126804	0/0	t0004	3841	26	0	3	20	2	1	copy fasta	RAB43	chr3	129082572	129126804
RAB43_chr3_129082572_129126804	0/1	t0005	3841	11	1	4	0	1	4	copy fasta	RAB43	chr3	129082572	129126804
RAB43_chr3_129082572_129126804	0/0	t0006	3841	8	0	1	2	2	3	copy fasta	RAB43	chr3	129082572	129126804
RAB43_chr3_129082572_129126804	0/0	t0007	3841	8	0	0	8	0	0	copy fasta	RAB43	chr3	129082572	129126804