JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RAB43_chr3_129082572_129126804	0/0	t0008	3840	7	5	2	0	0	0	copy fasta	RAB43	chr3	129082572	129126804
RAB43_chr3_129082572_129126804	0/0	t0009	3840	7	0	3	1	0	3	copy fasta	RAB43	chr3	129082572	129126804
RAB43_chr3_129082572_129126804	0/0	t0010	3840	4	3	1	0	0	0	copy fasta	RAB43	chr3	129082572	129126804
RAB43_chr3_129082572_129126804	0/0	t0011	3840	3	3	0	0	0	0	copy fasta	RAB43	chr3	129082572	129126804
RAB43_chr3_129082572_129126804	0/0	t0012	3839	3	3	0	0	0	0	copy fasta	RAB43	chr3	129082572	129126804
RAB43_chr3_129082572_129126804	0/0	t0013	3841	3	2	1	0	0	0	copy fasta	RAB43	chr3	129082572	129126804
RAB43_chr3_129082572_129126804	0/0	t0014	3840	2	2	0	0	0	0	copy fasta	RAB43	chr3	129082572	129126804
RAB43_chr3_129082572_129126804	1/0	t0015	3840	2	0	1	0	0	0	copy fasta	RAB43	chr3	129082572	129126804
RAB43_chr3_129082572_129126804	0/0	t0016	3841	2	0	0	2	0	0	copy fasta	RAB43	chr3	129082572	129126804
RAB43_chr3_129082572_129126804	0/0	t0017	3840	2	2	0	0	0	0	copy fasta	RAB43	chr3	129082572	129126804
RAB43_chr3_129082572_129126804	0/0	t0018	3841	1	0	0	1	0	0	copy fasta	RAB43	chr3	129082572	129126804
RAB43_chr3_129082572_129126804	0/0	t0019	3841	1	0	1	0	0	0	copy fasta	RAB43	chr3	129082572	129126804
RAB43_chr3_129082572_129126804	0/0	t0020	3841	1	0	0	1	0	0	copy fasta	RAB43	chr3	129082572	129126804
RAB43_chr3_129082572_129126804	0/0	t0021	3840	1	1	0	0	0	0	copy fasta	RAB43	chr3	129082572	129126804
RAB43_chr3_129082572_129126804	0/0	t0022	3841	1	1	0	0	0	0	copy fasta	RAB43	chr3	129082572	129126804
RAB43_chr3_129082572_129126804	0/0	t0023	3841	1	1	0	0	0	0	copy fasta	RAB43	chr3	129082572	129126804
RAB43_chr3_129082572_129126804	0/0	t0024	3840	1	1	0	0	0	0	copy fasta	RAB43	chr3	129082572	129126804
RAB43_chr3_129082572_129126804	0/0	t0025	3841	1	1	0	0	0	0	copy fasta	RAB43	chr3	129082572	129126804
RAB43_chr3_129082572_129126804	0/0	t0026	3841	1	0	1	0	0	0	copy fasta	RAB43	chr3	129082572	129126804
RAB43_chr3_129082572_129126804	0/0	t0027	3841	1	0	1	0	0	0	copy fasta	RAB43	chr3	129082572	129126804
RAB43_chr3_129082572_129126804	0/0	t0028	3841	1	1	0	0	0	0	copy fasta	RAB43	chr3	129082572	129126804
RAB43_chr3_129082572_129126804	0/0	t0029	3841	1	0	0	1	0	0	copy fasta	RAB43	chr3	129082572	129126804
RAB43_chr3_129082572_129126804	0/0	t0030	3841	1	1	0	0	0	0	copy fasta	RAB43	chr3	129082572	129126804
RAB43_chr3_129082572_129126804	0/0	t0031	3841	1	0	0	0	0	1	copy fasta	RAB43	chr3	129082572	129126804
RAB43_chr3_129082572_129126804	0/0	t0032	3864	1	0	1	0	0	0	copy fasta	RAB43	chr3	129082572	129126804
RAB43_chr3_129082572_129126804	0/0	t0033	3841	1	0	0	1	0	0	copy fasta	RAB43	chr3	129082572	129126804
RAB43_chr3_129082572_129126804	0/0	t0034	3840	1	1	0	0	0	0	copy fasta	RAB43	chr3	129082572	129126804
RAB43_chr3_129082572_129126804	0/0	t0035	3840	1	0	0	0	0	1	copy fasta	RAB43	chr3	129082572	129126804
RAB43_chr3_129082572_129126804	0/0	t0036	3841	1	0	0	1	0	0	copy fasta	RAB43	chr3	129082572	129126804
RAB43_chr3_129082572_129126804	0/0	t0037	3841	1	1	0	0	0	0	copy fasta	RAB43	chr3	129082572	129126804
RAB44_chr6_36692826_36738184	1/0	t0001	1194	229	34	42	116	13	23	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	0/0	t0002	1197	69	17	11	25	4	12	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	0/0	t0003	1197	55	1	10	33	1	10	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	0/1	t0004	1194	16	6	5	4	0	0	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	0/0	t0005	1194	10	9	1	0	0	0	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	0/0	t0006	1194	5	3	0	1	0	1	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	0/0	t0007	1197	4	4	0	0	0	0	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	0/0	t0008	1194	4	4	0	0	0	0	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	0/0	t0009	1197	4	0	2	2	0	0	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	0/0	t0010	1197	3	2	1	0	0	0	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	0/0	t0011	1194	3	3	0	0	0	0	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	0/0	t0012	1194	3	0	0	3	0	0	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	0/0	t0013	1197	2	0	1	1	0	0	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	0/0	t0014	1194	2	0	1	1	0	0	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	0/0	t0015	1194	2	0	1	1	0	0	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	0/0	t0016	1197	2	1	1	0	0	0	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	0/0	t0017	1197	2	2	0	0	0	0	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	0/0	t0018	1194	2	0	0	2	0	0	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	0/0	t0019	1194	1	1	0	0	0	0	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	0/0	t0020	1194	1	0	0	0	0	1	copy fasta	RAB44	chr6	36692826	36738184