JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RAB44_chr6_36692826_36738184	0/0	t0021	1194	1	1	0	0	0	0	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	0/0	t0022	1197	1	1	0	0	0	0	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	0/0	t0023	1194	1	1	0	0	0	0	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	0/0	t0024	1194	1	0	0	1	0	0	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	0/0	t0025	1194	1	0	0	0	0	1	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	0/0	t0026	1194	1	0	0	1	0	0	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	0/0	t0027	1194	1	0	0	1	0	0	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	0/0	t0028	1194	1	1	0	0	0	0	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	0/0	t0029	1197	1	1	0	0	0	0	copy fasta	RAB44	chr6	36692826	36738184
RAB4A_chr1_229266111_229310894	0/1	t0001	2331	148	21	35	72	5	14	copy fasta	RAB4A	chr1	229266111	229310894
RAB4A_chr1_229266111_229310894	1/0	t0002	2331	147	34	26	64	3	19	copy fasta	RAB4A	chr1	229266111	229310894
RAB4A_chr1_229266111_229310894	0/0	t0003	2331	77	29	12	22	4	10	copy fasta	RAB4A	chr1	229266111	229310894
RAB4A_chr1_229266111_229310894	0/0	t0004	2331	8	8	0	0	0	0	copy fasta	RAB4A	chr1	229266111	229310894
RAB4A_chr1_229266111_229310894	0/0	t0005	2331	7	0	0	7	0	0	copy fasta	RAB4A	chr1	229266111	229310894
RAB4A_chr1_229266111_229310894	0/0	t0006	2331	2	1	1	0	0	0	copy fasta	RAB4A	chr1	229266111	229310894
RAB4A_chr1_229266111_229310894	0/0	t0007	2331	2	0	0	2	0	0	copy fasta	RAB4A	chr1	229266111	229310894
RAB4A_chr1_229266111_229310894	0/0	t0008	2331	1	1	0	0	0	0	copy fasta	RAB4A	chr1	229266111	229310894
RAB4A_chr1_229266111_229310894	0/0	t0009	2331	1	0	0	1	0	0	copy fasta	RAB4A	chr1	229266111	229310894
RAB4A_chr1_229266111_229310894	0/0	t0010	2331	1	0	0	1	0	0	copy fasta	RAB4A	chr1	229266111	229310894
RAB4A_chr1_229266111_229310894	0/0	t0011	2331	1	0	0	0	0	1	copy fasta	RAB4A	chr1	229266111	229310894
RAB4A_chr1_229266111_229310894	0/0	t0012	2331	1	0	0	1	0	0	copy fasta	RAB4A	chr1	229266111	229310894
RAB4A_chr1_229266111_229310894	0/0	t0013	2331	1	0	0	1	0	0	copy fasta	RAB4A	chr1	229266111	229310894
RAB4A_chr1_229266111_229310894	0/0	t0014	2331	1	0	0	1	0	0	copy fasta	RAB4A	chr1	229266111	229310894
RAB4A_chr1_229266111_229310894	0/0	t0015	2331	1	0	0	1	0	0	copy fasta	RAB4A	chr1	229266111	229310894
RAB4A_chr1_229266111_229310894	0/0	t0016	2331	1	0	0	1	0	0	copy fasta	RAB4A	chr1	229266111	229310894
RAB4B_chr19_40773247_40801942	1/1	t0001	518	177	59	26	57	7	26	copy fasta	RAB4B	chr19	40773247	40801942
RAB4B_chr19_40773247_40801942	0/0	t0002	517	109	2	21	71	4	11	copy fasta	RAB4B	chr19	40773247	40801942
RAB4B_chr19_40773247_40801942	0/0	t0003	518	87	23	9	46	4	5	copy fasta	RAB4B	chr19	40773247	40801942
RAB4B_chr19_40773247_40801942	0/0	t0004	518	3	0	2	0	1	0	copy fasta	RAB4B	chr19	40773247	40801942
RAB4B_chr19_40773247_40801942	0/0	t0005	517	2	0	0	2	0	0	copy fasta	RAB4B	chr19	40773247	40801942
RAB4B_chr19_40773247_40801942	0/0	t0006	518	2	2	0	0	0	0	copy fasta	RAB4B	chr19	40773247	40801942
RAB4B_chr19_40773247_40801942	0/0	t0007	518	2	2	0	0	0	0	copy fasta	RAB4B	chr19	40773247	40801942
RAB4B_chr19_40773247_40801942	0/0	t0008	518	2	2	0	0	0	0	copy fasta	RAB4B	chr19	40773247	40801942
RAB5A_chr3_19942097_19990175	1/0	t0001	1871	100	7	17	62	4	9	copy fasta	RAB5A	chr3	19942097	19990175
RAB5A_chr3_19942097_19990175	0/0	t0002	1875	68	14	7	33	1	13	copy fasta	RAB5A	chr3	19942097	19990175
RAB5A_chr3_19942097_19990175	0/0	t0003	1870	66	24	8	21	3	10	copy fasta	RAB5A	chr3	19942097	19990175
RAB5A_chr3_19942097_19990175	0/0	t0004	1872	32	18	7	2	1	4	copy fasta	RAB5A	chr3	19942097	19990175
RAB5A_chr3_19942097_19990175	0/1	t0005	1884	31	0	20	1	5	4	copy fasta	RAB5A	chr3	19942097	19990175
RAB5A_chr3_19942097_19990175	0/0	t0006	1878	9	9	0	0	0	0	copy fasta	RAB5A	chr3	19942097	19990175
RAB5A_chr3_19942097_19990175	0/0	t0007	1870	8	0	0	8	0	0	copy fasta	RAB5A	chr3	19942097	19990175
RAB5A_chr3_19942097_19990175	0/0	t0008	1870	6	5	1	0	0	0	copy fasta	RAB5A	chr3	19942097	19990175
RAB5A_chr3_19942097_19990175	0/0	t0009	1872	5	4	1	0	0	0	copy fasta	RAB5A	chr3	19942097	19990175
RAB5A_chr3_19942097_19990175	0/0	t0010	1878	4	0	3	0	1	0	copy fasta	RAB5A	chr3	19942097	19990175
RAB5A_chr3_19942097_19990175	0/0	t0011	1881	4	0	2	0	1	1	copy fasta	RAB5A	chr3	19942097	19990175
RAB5A_chr3_19942097_19990175	0/0	t0012	1862	3	3	0	0	0	0	copy fasta	RAB5A	chr3	19942097	19990175
RAB5A_chr3_19942097_19990175	0/0	t0013	1877	3	3	0	0	0	0	copy fasta	RAB5A	chr3	19942097	19990175
RAB5A_chr3_19942097_19990175	0/0	t0014	1870	1	0	0	0	0	1	copy fasta	RAB5A	chr3	19942097	19990175
RAB5A_chr3_19942097_19990175	0/0	t0015	1870	1	1	0	0	0	0	copy fasta	RAB5A	chr3	19942097	19990175
RAB5A_chr3_19942097_19990175	0/0	t0016	1872	1	0	0	0	0	1	copy fasta	RAB5A	chr3	19942097	19990175
RAB5A_chr3_19942097_19990175	0/0	t0017	1872	1	1	0	0	0	0	copy fasta	RAB5A	chr3	19942097	19990175