JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RAB5A_chr3_19942097_19990175	0/0	t0018	1871	1	0	0	1	0	0	copy fasta	RAB5A	chr3	19942097	19990175
RAB5A_chr3_19942097_19990175	0/0	t0019	1875	1	0	0	1	0	0	copy fasta	RAB5A	chr3	19942097	19990175
RAB5A_chr3_19942097_19990175	0/0	t0020	1875	1	0	0	1	0	0	copy fasta	RAB5A	chr3	19942097	19990175
RAB5A_chr3_19942097_19990175	0/0	t0021	1878	1	1	0	0	0	0	copy fasta	RAB5A	chr3	19942097	19990175
RAB5A_chr3_19942097_19990175	0/0	t0022	1832	1	0	0	0	0	1	copy fasta	RAB5A	chr3	19942097	19990175
RAB5B_chr12_55969078_56001683	1/1	t0001	4626	84	15	25	29	6	7	copy fasta	RAB5B	chr12	55969078	56001683
RAB5B_chr12_55969078_56001683	0/0	t0002	4626	36	1	10	22	2	1	copy fasta	RAB5B	chr12	55969078	56001683
RAB5B_chr12_55969078_56001683	0/0	t0003	4626	26	0	1	17	0	8	copy fasta	RAB5B	chr12	55969078	56001683
RAB5B_chr12_55969078_56001683	0/0	t0004	4630	13	1	0	12	0	0	copy fasta	RAB5B	chr12	55969078	56001683
RAB5B_chr12_55969078_56001683	0/0	t0005	4630	12	0	0	11	0	1	copy fasta	RAB5B	chr12	55969078	56001683
RAB5B_chr12_55969078_56001683	0/0	t0006	4626	11	0	3	7	0	1	copy fasta	RAB5B	chr12	55969078	56001683
RAB5B_chr12_55969078_56001683	0/0	t0007	4628	9	1	0	7	0	1	copy fasta	RAB5B	chr12	55969078	56001683
RAB5B_chr12_55969078_56001683	0/0	t0008	4632	8	0	2	6	0	0	copy fasta	RAB5B	chr12	55969078	56001683
RAB5B_chr12_55969078_56001683	0/0	t0009	4626	8	8	0	0	0	0	copy fasta	RAB5B	chr12	55969078	56001683
RAB5B_chr12_55969078_56001683	0/0	t0010	4632	7	0	3	3	1	0	copy fasta	RAB5B	chr12	55969078	56001683
RAB5B_chr12_55969078_56001683	0/0	t0011	4634	7	2	4	0	0	1	copy fasta	RAB5B	chr12	55969078	56001683
RAB5B_chr12_55969078_56001683	0/0	t0012	4626	7	0	3	0	1	3	copy fasta	RAB5B	chr12	55969078	56001683
RAB5B_chr12_55969078_56001683	0/0	t0013	4640	6	0	6	0	0	0	copy fasta	RAB5B	chr12	55969078	56001683
RAB5B_chr12_55969078_56001683	0/0	t0014	4626	6	0	1	5	0	0	copy fasta	RAB5B	chr12	55969078	56001683
RAB5B_chr12_55969078_56001683	0/0	t0015	4627	5	0	0	5	0	0	copy fasta	RAB5B	chr12	55969078	56001683
RAB5B_chr12_55969078_56001683	0/0	t0016	4626	5	2	1	2	0	0	copy fasta	RAB5B	chr12	55969078	56001683
RAB5B_chr12_55969078_56001683	0/0	t0017	4628	5	1	2	2	0	0	copy fasta	RAB5B	chr12	55969078	56001683
RAB5B_chr12_55969078_56001683	0/0	t0018	4627	4	0	1	3	0	0	copy fasta	RAB5B	chr12	55969078	56001683
RAB5B_chr12_55969078_56001683	0/0	t0019	4630	4	0	0	4	0	0	copy fasta	RAB5B	chr12	55969078	56001683
RAB5B_chr12_55969078_56001683	0/0	t0020	4630	4	0	0	4	0	0	copy fasta	RAB5B	chr12	55969078	56001683
RAB5B_chr12_55969078_56001683	0/0	t0021	4627	4	0	0	4	0	0	copy fasta	RAB5B	chr12	55969078	56001683
RAB5B_chr12_55969078_56001683	0/0	t0022	4627	4	4	0	0	0	0	copy fasta	RAB5B	chr12	55969078	56001683
RAB5B_chr12_55969078_56001683	0/0	t0023	4625	3	0	0	0	0	3	copy fasta	RAB5B	chr12	55969078	56001683
RAB5B_chr12_55969078_56001683	0/0	t0024	4626	3	0	0	1	0	2	copy fasta	RAB5B	chr12	55969078	56001683
RAB5B_chr12_55969078_56001683	0/0	t0025	4626	3	0	0	3	0	0	copy fasta	RAB5B	chr12	55969078	56001683
RAB5B_chr12_55969078_56001683	0/0	t0026	4630	3	2	1	0	0	0	copy fasta	RAB5B	chr12	55969078	56001683
RAB5B_chr12_55969078_56001683	0/0	t0027	4626	3	0	0	3	0	0	copy fasta	RAB5B	chr12	55969078	56001683
RAB5B_chr12_55969078_56001683	0/0	t0028	4625	3	3	0	0	0	0	copy fasta	RAB5B	chr12	55969078	56001683
RAB5B_chr12_55969078_56001683	0/0	t0029	4624	3	2	1	0	0	0	copy fasta	RAB5B	chr12	55969078	56001683
RAB5B_chr12_55969078_56001683	0/0	t0030	4625	3	0	2	0	1	0	copy fasta	RAB5B	chr12	55969078	56001683
RAB5B_chr12_55969078_56001683	0/0	t0031	4657	3	3	0	0	0	0	copy fasta	RAB5B	chr12	55969078	56001683
RAB5B_chr12_55969078_56001683	0/0	t0032	4627	2	0	0	2	0	0	copy fasta	RAB5B	chr12	55969078	56001683
RAB5B_chr12_55969078_56001683	0/0	t0033	4627	2	0	0	2	0	0	copy fasta	RAB5B	chr12	55969078	56001683
RAB5B_chr12_55969078_56001683	0/0	t0034	4626	2	0	0	2	0	0	copy fasta	RAB5B	chr12	55969078	56001683
RAB5B_chr12_55969078_56001683	0/0	t0035	4642	2	0	0	0	1	1	copy fasta	RAB5B	chr12	55969078	56001683
RAB5B_chr12_55969078_56001683	0/0	t0036	4639	2	0	1	1	0	0	copy fasta	RAB5B	chr12	55969078	56001683
RAB5B_chr12_55969078_56001683	0/0	t0037	4626	2	0	1	0	1	0	copy fasta	RAB5B	chr12	55969078	56001683
RAB5B_chr12_55969078_56001683	0/0	t0038	4626	2	0	0	1	0	1	copy fasta	RAB5B	chr12	55969078	56001683
RAB5B_chr12_55969078_56001683	0/0	t0039	4626	2	1	1	0	0	0	copy fasta	RAB5B	chr12	55969078	56001683
RAB5B_chr12_55969078_56001683	0/0	t0040	4626	2	0	2	0	0	0	copy fasta	RAB5B	chr12	55969078	56001683
RAB5B_chr12_55969078_56001683	0/0	t0041	4659	2	2	0	0	0	0	copy fasta	RAB5B	chr12	55969078	56001683
RAB5B_chr12_55969078_56001683	0/0	t0042	4635	1	0	0	1	0	0	copy fasta	RAB5B	chr12	55969078	56001683
RAB5B_chr12_55969078_56001683	0/0	t0043	4636	1	0	0	1	0	0	copy fasta	RAB5B	chr12	55969078	56001683
RAB5B_chr12_55969078_56001683	0/0	t0044	4641	1	0	0	1	0	0	copy fasta	RAB5B	chr12	55969078	56001683
RAB5B_chr12_55969078_56001683	0/0	t0045	4635	1	0	0	0	0	1	copy fasta	RAB5B	chr12	55969078	56001683