JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RAB5B_chr12_55969078_56001683	0/0	t0096	4626	1	1	0	0	0	0	copy fasta	RAB5B	chr12	55969078	56001683
RAB5B_chr12_55969078_56001683	0/0	t0097	4630	1	1	0	0	0	0	copy fasta	RAB5B	chr12	55969078	56001683
RAB5B_chr12_55969078_56001683	0/0	t0098	4650	1	1	0	0	0	0	copy fasta	RAB5B	chr12	55969078	56001683
RAB5B_chr12_55969078_56001683	0/0	t0099	4627	1	0	1	0	0	0	copy fasta	RAB5B	chr12	55969078	56001683
RAB5B_chr12_55969078_56001683	0/0	t0100	4626	1	0	1	0	0	0	copy fasta	RAB5B	chr12	55969078	56001683
RAB5B_chr12_55969078_56001683	0/0	t0101	4626	1	0	0	0	1	0	copy fasta	RAB5B	chr12	55969078	56001683
RAB5C_chr17_42119979_42159989	1/1	t0001	990	292	90	54	102	16	28	copy fasta	RAB5C	chr17	42119979	42159989
RAB5C_chr17_42119979_42159989	0/0	t0002	990	7	0	0	0	0	7	copy fasta	RAB5C	chr17	42119979	42159989
RAB5C_chr17_42119979_42159989	0/0	t0003	990	2	2	0	0	0	0	copy fasta	RAB5C	chr17	42119979	42159989
RAB5C_chr17_42119979_42159989	0/0	t0004	990	1	0	0	0	0	1	copy fasta	RAB5C	chr17	42119979	42159989
RAB5C_chr17_42119979_42159989	0/0	t0005	990	1	0	0	1	0	0	copy fasta	RAB5C	chr17	42119979	42159989
RAB5C_chr17_42119979_42159989	0/0	t0006	977	1	1	0	0	0	0	copy fasta	RAB5C	chr17	42119979	42159989
RAB5C_chr17_42119979_42159989	0/0	t0007	990	1	0	0	1	0	0	copy fasta	RAB5C	chr17	42119979	42159989
RAB5C_chr17_42119979_42159989	0/0	t0008	990	1	1	0	0	0	0	copy fasta	RAB5C	chr17	42119979	42159989
RAB5IF_chr20_36600779_36617557	1/1	t0001	680	287	67	56	128	9	25	copy fasta	RAB5IF	chr20	36600779	36617557
RAB5IF_chr20_36600779_36617557	0/0	t0002	680	59	0	15	33	5	6	copy fasta	RAB5IF	chr20	36600779	36617557
RAB5IF_chr20_36600779_36617557	0/0	t0003	680	30	8	7	10	0	5	copy fasta	RAB5IF	chr20	36600779	36617557
RAB5IF_chr20_36600779_36617557	0/0	t0004	680	9	9	0	0	0	0	copy fasta	RAB5IF	chr20	36600779	36617557
RAB5IF_chr20_36600779_36617557	0/0	t0005	683	7	6	1	0	0	0	copy fasta	RAB5IF	chr20	36600779	36617557
RAB5IF_chr20_36600779_36617557	0/0	t0006	680	2	2	0	0	0	0	copy fasta	RAB5IF	chr20	36600779	36617557
RAB5IF_chr20_36600779_36617557	0/0	t0007	680	2	2	0	0	0	0	copy fasta	RAB5IF	chr20	36600779	36617557
RAB5IF_chr20_36600779_36617557	0/0	t0008	680	1	0	0	1	0	0	copy fasta	RAB5IF	chr20	36600779	36617557
RAB5IF_chr20_36600779_36617557	0/0	t0009	680	1	0	1	0	0	0	copy fasta	RAB5IF	chr20	36600779	36617557
RAB6A_chr11_73670638_73766074	0/1	t0001	2694	104	2	22	58	3	18	copy fasta	RAB6A	chr11	73670638	73766074
RAB6A_chr11_73670638_73766074	0/0	t0002	2700	96	22	13	51	3	7	copy fasta	RAB6A	chr11	73670638	73766074
RAB6A_chr11_73670638_73766074	0/0	t0003	2700	52	6	8	25	3	10	copy fasta	RAB6A	chr11	73670638	73766074
RAB6A_chr11_73670638_73766074	1/0	t0004	2700	30	21	6	0	0	2	copy fasta	RAB6A	chr11	73670638	73766074
RAB6A_chr11_73670638_73766074	0/0	t0005	2701	25	4	6	10	3	2	copy fasta	RAB6A	chr11	73670638	73766074
RAB6A_chr11_73670638_73766074	0/0	t0006	2694	10	10	0	0	0	0	copy fasta	RAB6A	chr11	73670638	73766074
RAB6A_chr11_73670638_73766074	0/0	t0007	2700	8	8	0	0	0	0	copy fasta	RAB6A	chr11	73670638	73766074
RAB6A_chr11_73670638_73766074	0/0	t0008	2694	6	0	0	6	0	0	copy fasta	RAB6A	chr11	73670638	73766074
RAB6A_chr11_73670638_73766074	0/0	t0009	2701	5	5	0	0	0	0	copy fasta	RAB6A	chr11	73670638	73766074
RAB6A_chr11_73670638_73766074	0/0	t0010	2701	2	1	1	0	0	0	copy fasta	RAB6A	chr11	73670638	73766074
RAB6A_chr11_73670638_73766074	0/0	t0011	2700	2	2	0	0	0	0	copy fasta	RAB6A	chr11	73670638	73766074
RAB6A_chr11_73670638_73766074	0/0	t0012	2700	2	2	0	0	0	0	copy fasta	RAB6A	chr11	73670638	73766074
RAB6A_chr11_73670638_73766074	0/0	t0013	2701	1	1	0	0	0	0	copy fasta	RAB6A	chr11	73670638	73766074
RAB6A_chr11_73670638_73766074	0/0	t0014	2701	1	1	0	0	0	0	copy fasta	RAB6A	chr11	73670638	73766074
RAB6A_chr11_73670638_73766074	0/0	t0015	2700	1	0	0	0	0	1	copy fasta	RAB6A	chr11	73670638	73766074
RAB6A_chr11_73670638_73766074	0/0	t0016	2700	1	1	0	0	0	0	copy fasta	RAB6A	chr11	73670638	73766074
RAB6A_chr11_73670638_73766074	0/0	t0017	2701	1	0	0	0	0	1	copy fasta	RAB6A	chr11	73670638	73766074
RAB6A_chr11_73670638_73766074	0/0	t0018	2700	1	0	0	1	0	0	copy fasta	RAB6A	chr11	73670638	73766074
RAB6A_chr11_73670638_73766074	0/0	t0019	2700	1	1	0	0	0	0	copy fasta	RAB6A	chr11	73670638	73766074
RAB6A_chr11_73670638_73766074	0/0	t0020	2701	1	1	0	0	0	0	copy fasta	RAB6A	chr11	73670638	73766074
RAB6A_chr11_73670638_73766074	0/0	t0021	2700	1	0	0	1	0	0	copy fasta	RAB6A	chr11	73670638	73766074
RAB6A_chr11_73670638_73766074	0/0	t0022	2701	1	1	0	0	0	0	copy fasta	RAB6A	chr11	73670638	73766074
RAB6A_chr11_73670638_73766074	0/0	t0023	2700	1	0	0	0	0	1	copy fasta	RAB6A	chr11	73670638	73766074
RAB6A_chr11_73670638_73766074	0/0	t0024	2700	1	1	0	0	0	0	copy fasta	RAB6A	chr11	73670638	73766074
RAB6B_chr3_133819235_133900882	1/0	t0001	4970	24	3	5	8	2	5	copy fasta	RAB6B	chr3	133819235	133900882
RAB6B_chr3_133819235_133900882	0/0	t0002	4971	23	4	7	9	3	0	copy fasta	RAB6B	chr3	133819235	133900882
RAB6B_chr3_133819235_133900882	0/0	t0003	4967	20	0	3	14	1	2	copy fasta	RAB6B	chr3	133819235	133900882