JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RAB6B_chr3_133819235_133900882	0/0	t0054	4967	1	0	0	0	0	1	copy fasta	RAB6B	chr3	133819235	133900882
RAB6B_chr3_133819235_133900882	0/0	t0055	4966	1	0	0	0	0	1	copy fasta	RAB6B	chr3	133819235	133900882
RAB6B_chr3_133819235_133900882	0/0	t0056	4971	1	0	0	1	0	0	copy fasta	RAB6B	chr3	133819235	133900882
RAB6B_chr3_133819235_133900882	0/0	t0057	4970	1	1	0	0	0	0	copy fasta	RAB6B	chr3	133819235	133900882
RAB6B_chr3_133819235_133900882	0/0	t0058	4970	1	0	0	1	0	0	copy fasta	RAB6B	chr3	133819235	133900882
RAB6B_chr3_133819235_133900882	0/0	t0059	4969	1	0	0	1	0	0	copy fasta	RAB6B	chr3	133819235	133900882
RAB6B_chr3_133819235_133900882	0/0	t0060	4970	1	0	0	1	0	0	copy fasta	RAB6B	chr3	133819235	133900882
RAB6B_chr3_133819235_133900882	0/0	t0061	4966	1	0	1	0	0	0	copy fasta	RAB6B	chr3	133819235	133900882
RAB6B_chr3_133819235_133900882	0/0	t0062	4972	1	0	0	0	0	1	copy fasta	RAB6B	chr3	133819235	133900882
RAB6B_chr3_133819235_133900882	0/0	t0063	4973	1	0	0	1	0	0	copy fasta	RAB6B	chr3	133819235	133900882
RAB6B_chr3_133819235_133900882	0/0	t0064	4972	1	1	0	0	0	0	copy fasta	RAB6B	chr3	133819235	133900882
RAB6B_chr3_133819235_133900882	0/0	t0065	4971	1	0	1	0	0	0	copy fasta	RAB6B	chr3	133819235	133900882
RAB6B_chr3_133819235_133900882	0/0	t0066	4970	1	1	0	0	0	0	copy fasta	RAB6B	chr3	133819235	133900882
RAB6B_chr3_133819235_133900882	0/0	t0067	4969	1	1	0	0	0	0	copy fasta	RAB6B	chr3	133819235	133900882
RAB6B_chr3_133819235_133900882	0/0	t0068	4969	1	1	0	0	0	0	copy fasta	RAB6B	chr3	133819235	133900882
RAB6B_chr3_133819235_133900882	0/0	t0069	4969	1	1	0	0	0	0	copy fasta	RAB6B	chr3	133819235	133900882
RAB6B_chr3_133819235_133900882	0/0	t0070	4969	1	1	0	0	0	0	copy fasta	RAB6B	chr3	133819235	133900882
RAB6B_chr3_133819235_133900882	0/0	t0071	4968	1	1	0	0	0	0	copy fasta	RAB6B	chr3	133819235	133900882
RAB6B_chr3_133819235_133900882	0/0	t0072	4968	1	0	0	0	0	1	copy fasta	RAB6B	chr3	133819235	133900882
RAB6B_chr3_133819235_133900882	0/0	t0073	4967	1	1	0	0	0	0	copy fasta	RAB6B	chr3	133819235	133900882
RAB6B_chr3_133819235_133900882	0/0	t0074	4967	1	1	0	0	0	0	copy fasta	RAB6B	chr3	133819235	133900882
RAB6B_chr3_133819235_133900882	0/0	t0075	4966	1	1	0	0	0	0	copy fasta	RAB6B	chr3	133819235	133900882
RAB6B_chr3_133819235_133900882	0/0	t0076	4971	1	0	0	1	0	0	copy fasta	RAB6B	chr3	133819235	133900882
RAB6B_chr3_133819235_133900882	0/0	t0077	4970	1	0	0	1	0	0	copy fasta	RAB6B	chr3	133819235	133900882
RAB6B_chr3_133819235_133900882	0/0	t0078	4969	1	0	0	1	0	0	copy fasta	RAB6B	chr3	133819235	133900882
RAB6B_chr3_133819235_133900882	0/0	t0079	4968	1	1	0	0	0	0	copy fasta	RAB6B	chr3	133819235	133900882
RAB6B_chr3_133819235_133900882	0/0	t0080	4967	1	0	0	1	0	0	copy fasta	RAB6B	chr3	133819235	133900882
RAB6B_chr3_133819235_133900882	0/0	t0081	4968	1	0	0	1	0	0	copy fasta	RAB6B	chr3	133819235	133900882
RAB6B_chr3_133819235_133900882	0/0	t0082	4967	1	0	0	0	0	1	copy fasta	RAB6B	chr3	133819235	133900882
RAB6B_chr3_133819235_133900882	0/0	t0083	4967	1	1	0	0	0	0	copy fasta	RAB6B	chr3	133819235	133900882
RAB6B_chr3_133819235_133900882	0/0	t0084	4971	1	1	0	0	0	0	copy fasta	RAB6B	chr3	133819235	133900882
RAB6B_chr3_133819235_133900882	0/0	t0085	4970	1	1	0	0	0	0	copy fasta	RAB6B	chr3	133819235	133900882
RAB6B_chr3_133819235_133900882	0/0	t0086	4970	1	1	0	0	0	0	copy fasta	RAB6B	chr3	133819235	133900882
RAB6B_chr3_133819235_133900882	0/0	t0087	4970	1	1	0	0	0	0	copy fasta	RAB6B	chr3	133819235	133900882
RAB6B_chr3_133819235_133900882	0/0	t0088	4969	1	1	0	0	0	0	copy fasta	RAB6B	chr3	133819235	133900882
RAB6B_chr3_133819235_133900882	0/0	t0089	4968	1	1	0	0	0	0	copy fasta	RAB6B	chr3	133819235	133900882
RAB6B_chr3_133819235_133900882	0/0	t0090	4968	1	1	0	0	0	0	copy fasta	RAB6B	chr3	133819235	133900882
RAB6B_chr3_133819235_133900882	0/0	t0091	4968	1	1	0	0	0	0	copy fasta	RAB6B	chr3	133819235	133900882
RAB6B_chr3_133819235_133900882	0/0	t0092	4968	1	0	0	1	0	0	copy fasta	RAB6B	chr3	133819235	133900882
RAB6B_chr3_133819235_133900882	0/0	t0093	4967	1	1	0	0	0	0	copy fasta	RAB6B	chr3	133819235	133900882
RAB6B_chr3_133819235_133900882	0/0	t0094	4967	1	1	0	0	0	0	copy fasta	RAB6B	chr3	133819235	133900882
RAB6B_chr3_133819235_133900882	0/0	t0095	4967	1	0	0	0	0	1	copy fasta	RAB6B	chr3	133819235	133900882
RAB6B_chr3_133819235_133900882	0/0	t0096	4973	1	0	1	0	0	0	copy fasta	RAB6B	chr3	133819235	133900882
RAB6B_chr3_133819235_133900882	0/0	t0097	4972	1	0	1	0	0	0	copy fasta	RAB6B	chr3	133819235	133900882
RAB6B_chr3_133819235_133900882	0/0	t0098	4971	1	0	0	0	1	0	copy fasta	RAB6B	chr3	133819235	133900882
RAB6B_chr3_133819235_133900882	0/0	t0099	4969	1	1	0	0	0	0	copy fasta	RAB6B	chr3	133819235	133900882
RAB6B_chr3_133819235_133900882	0/0	t0100	4968	1	1	0	0	0	0	copy fasta	RAB6B	chr3	133819235	133900882
RAB6B_chr3_133819235_133900882	0/0	t0101	4966	1	0	0	1	0	0	copy fasta	RAB6B	chr3	133819235	133900882
RAB6B_chr3_133819235_133900882	0/0	t0102	4967	1	0	0	1	0	0	copy fasta	RAB6B	chr3	133819235	133900882
RAB6B_chr3_133819235_133900882	0/0	t0103	4954	1	0	0	1	0	0	copy fasta	RAB6B	chr3	133819235	133900882