JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RAB6B_chr3_133819235_133900882	0/0	t0104	4973	1	0	1	0	0	0	copy fasta	RAB6B	chr3	133819235	133900882
RAB6B_chr3_133819235_133900882	0/0	t0105	4967	1	0	0	0	0	1	copy fasta	RAB6B	chr3	133819235	133900882
RAB6C_chr2_129974666_129987738	0/1	t0001	2298	168	22	36	84	5	20	copy fasta	RAB6C	chr2	129974666	129987738
RAB6C_chr2_129974666_129987738	1/0	t0002	2309	93	1	22	47	4	18	copy fasta	RAB6C	chr2	129974666	129987738
RAB6C_chr2_129974666_129987738	0/0	t0003	2308	30	3	0	25	0	2	copy fasta	RAB6C	chr2	129974666	129987738
RAB6C_chr2_129974666_129987738	0/0	t0004	2306	25	23	2	0	0	0	copy fasta	RAB6C	chr2	129974666	129987738
RAB6C_chr2_129974666_129987738	0/0	t0005	2298	16	0	1	15	0	0	copy fasta	RAB6C	chr2	129974666	129987738
RAB6C_chr2_129974666_129987738	0/0	t0006	2308	15	14	0	1	0	0	copy fasta	RAB6C	chr2	129974666	129987738
RAB6C_chr2_129974666_129987738	0/0	t0007	2305	11	10	1	0	0	0	copy fasta	RAB6C	chr2	129974666	129987738
RAB6C_chr2_129974666_129987738	0/0	t0008	2302	8	8	0	0	0	0	copy fasta	RAB6C	chr2	129974666	129987738
RAB6C_chr2_129974666_129987738	0/0	t0009	2298	5	5	0	0	0	0	copy fasta	RAB6C	chr2	129974666	129987738
RAB6C_chr2_129974666_129987738	0/0	t0010	2309	3	0	0	3	0	0	copy fasta	RAB6C	chr2	129974666	129987738
RAB6C_chr2_129974666_129987738	0/0	t0011	2309	3	1	2	0	0	0	copy fasta	RAB6C	chr2	129974666	129987738
RAB6C_chr2_129974666_129987738	0/0	t0012	2299	3	0	1	0	0	2	copy fasta	RAB6C	chr2	129974666	129987738
RAB6C_chr2_129974666_129987738	0/0	t0013	2306	2	2	0	0	0	0	copy fasta	RAB6C	chr2	129974666	129987738
RAB6C_chr2_129974666_129987738	0/0	t0014	2298	2	0	0	2	0	0	copy fasta	RAB6C	chr2	129974666	129987738
RAB6C_chr2_129974666_129987738	0/0	t0015	2310	2	0	0	1	1	0	copy fasta	RAB6C	chr2	129974666	129987738
RAB6C_chr2_129974666_129987738	0/0	t0016	2305	2	0	0	1	0	1	copy fasta	RAB6C	chr2	129974666	129987738
RAB6C_chr2_129974666_129987738	0/0	t0017	2298	2	2	0	0	0	0	copy fasta	RAB6C	chr2	129974666	129987738
RAB6C_chr2_129974666_129987738	0/0	t0018	2308	2	2	0	0	0	0	copy fasta	RAB6C	chr2	129974666	129987738
RAB6C_chr2_129974666_129987738	0/0	t0019	2282	1	1	0	0	0	0	copy fasta	RAB6C	chr2	129974666	129987738
RAB6C_chr2_129974666_129987738	0/0	t0020	2306	1	1	0	0	0	0	copy fasta	RAB6C	chr2	129974666	129987738
RAB6C_chr2_129974666_129987738	0/0	t0021	2306	1	1	0	0	0	0	copy fasta	RAB6C	chr2	129974666	129987738
RAB6C_chr2_129974666_129987738	0/0	t0022	2308	1	0	1	0	0	0	copy fasta	RAB6C	chr2	129974666	129987738
RAB6C_chr2_129974666_129987738	0/0	t0023	2309	1	0	0	1	0	0	copy fasta	RAB6C	chr2	129974666	129987738
RAB6C_chr2_129974666_129987738	0/0	t0024	2297	1	0	0	1	0	0	copy fasta	RAB6C	chr2	129974666	129987738
RAB6C_chr2_129974666_129987738	0/0	t0025	2299	1	0	0	0	0	1	copy fasta	RAB6C	chr2	129974666	129987738
RAB6C_chr2_129974666_129987738	0/0	t0026	2298	1	0	0	1	0	0	copy fasta	RAB6C	chr2	129974666	129987738
RAB6C_chr2_129974666_129987738	0/0	t0027	2298	1	1	0	0	0	0	copy fasta	RAB6C	chr2	129974666	129987738
RAB6C_chr2_129974666_129987738	0/0	t0028	2310	1	1	0	0	0	0	copy fasta	RAB6C	chr2	129974666	129987738
RAB6D_chr2_131355492_131369168	0/1	t0001	2939	229	20	39	143	5	21	copy fasta	RAB6D	chr2	131355492	131369168
RAB6D_chr2_131355492_131369168	0/0	t0002	2913	78	26	5	32	5	10	copy fasta	RAB6D	chr2	131355492	131369168
RAB6D_chr2_131355492_131369168	0/0	t0003	2940	18	1	12	1	1	3	copy fasta	RAB6D	chr2	131355492	131369168
RAB6D_chr2_131355492_131369168	0/0	t0004	2915	7	1	2	0	3	1	copy fasta	RAB6D	chr2	131355492	131369168
RAB6D_chr2_131355492_131369168	0/0	t0005	2939	7	0	7	0	0	0	copy fasta	RAB6D	chr2	131355492	131369168
RAB6D_chr2_131355492_131369168	0/0	t0006	2914	6	6	0	0	0	0	copy fasta	RAB6D	chr2	131355492	131369168
RAB6D_chr2_131355492_131369168	0/0	t0007	2938	6	6	0	0	0	0	copy fasta	RAB6D	chr2	131355492	131369168
RAB6D_chr2_131355492_131369168	0/0	t0008	2913	4	4	0	0	0	0	copy fasta	RAB6D	chr2	131355492	131369168
RAB6D_chr2_131355492_131369168	0/0	t0009	2911	4	4	0	0	0	0	copy fasta	RAB6D	chr2	131355492	131369168
RAB6D_chr2_131355492_131369168	0/0	t0010	2915	4	2	2	0	0	0	copy fasta	RAB6D	chr2	131355492	131369168
RAB6D_chr2_131355492_131369168	0/0	t0011	2937	4	4	0	0	0	0	copy fasta	RAB6D	chr2	131355492	131369168
RAB6D_chr2_131355492_131369168	0/0	t0012	2939	4	4	0	0	0	0	copy fasta	RAB6D	chr2	131355492	131369168
RAB6D_chr2_131355492_131369168	0/0	t0013	2908	4	4	0	0	0	0	copy fasta	RAB6D	chr2	131355492	131369168
RAB6D_chr2_131355492_131369168	0/0	t0014	2914	3	2	1	0	0	0	copy fasta	RAB6D	chr2	131355492	131369168
RAB6D_chr2_131355492_131369168	0/0	t0015	2915	3	0	2	0	0	1	copy fasta	RAB6D	chr2	131355492	131369168
RAB6D_chr2_131355492_131369168	0/0	t0016	2939	3	0	0	3	0	0	copy fasta	RAB6D	chr2	131355492	131369168
RAB6D_chr2_131355492_131369168	0/0	t0017	2938	3	2	1	0	0	0	copy fasta	RAB6D	chr2	131355492	131369168
RAB6D_chr2_131355492_131369168	0/0	t0018	2913	2	0	0	0	0	2	copy fasta	RAB6D	chr2	131355492	131369168
RAB6D_chr2_131355492_131369168	0/0	t0019	2913	2	0	0	2	0	0	copy fasta	RAB6D	chr2	131355492	131369168
RAB6D_chr2_131355492_131369168	0/0	t0020	2915	2	0	1	0	1	0	copy fasta	RAB6D	chr2	131355492	131369168