Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ATXN7L1_chr7_105599772_105881599	0/0	t0003	3121	20	2	6	11	0	1	copy fasta	ATXN7L1	chr7	105599772	105881599
ATXN7L1_chr7_105599772_105881599	0/0	t0004	3126	13	5	3	3	0	2	copy fasta	ATXN7L1	chr7	105599772	105881599
ATXN7L1_chr7_105599772_105881599	0/0	t0005	3120	9	2	1	5	1	0	copy fasta	ATXN7L1	chr7	105599772	105881599
ATXN7L1_chr7_105599772_105881599	0/0	t0006	3125	9	3	2	2	0	2	copy fasta	ATXN7L1	chr7	105599772	105881599
ATXN7L1_chr7_105599772_105881599	1/0	t0007	3122	9	7	0	1	0	0	copy fasta	ATXN7L1	chr7	105599772	105881599
ATXN7L1_chr7_105599772_105881599	0/0	t0008	3120	9	2	2	5	0	0	copy fasta	ATXN7L1	chr7	105599772	105881599
ATXN7L1_chr7_105599772_105881599	0/0	t0009	3127	8	0	2	5	0	1	copy fasta	ATXN7L1	chr7	105599772	105881599
ATXN7L1_chr7_105599772_105881599	0/0	t0010	3125	8	1	2	3	0	2	copy fasta	ATXN7L1	chr7	105599772	105881599
ATXN7L1_chr7_105599772_105881599	0/0	t0011	3122	8	0	0	8	0	0	copy fasta	ATXN7L1	chr7	105599772	105881599
ATXN7L1_chr7_105599772_105881599	0/0	t0012	3127	7	0	6	0	0	1	copy fasta	ATXN7L1	chr7	105599772	105881599
ATXN7L1_chr7_105599772_105881599	0/0	t0013	3122	7	2	3	0	1	1	copy fasta	ATXN7L1	chr7	105599772	105881599
ATXN7L1_chr7_105599772_105881599	0/0	t0014	3123	7	0	3	1	2	1	copy fasta	ATXN7L1	chr7	105599772	105881599
ATXN7L1_chr7_105599772_105881599	0/0	t0015	3122	6	0	3	0	2	1	copy fasta	ATXN7L1	chr7	105599772	105881599
ATXN7L1_chr7_105599772_105881599	0/0	t0016	3127	5	3	2	0	0	0	copy fasta	ATXN7L1	chr7	105599772	105881599
ATXN7L1_chr7_105599772_105881599	0/0	t0017	3121	4	3	1	0	0	0	copy fasta	ATXN7L1	chr7	105599772	105881599
ATXN7L1_chr7_105599772_105881599	0/0	t0018	3122	4	1	1	2	0	0	copy fasta	ATXN7L1	chr7	105599772	105881599
ATXN7L1_chr7_105599772_105881599	0/0	t0019	3123	4	0	4	0	0	0	copy fasta	ATXN7L1	chr7	105599772	105881599
ATXN7L1_chr7_105599772_105881599	0/0	t0020	3128	3	0	3	0	0	0	copy fasta	ATXN7L1	chr7	105599772	105881599
ATXN7L1_chr7_105599772_105881599	0/0	t0021	3123	3	3	0	0	0	0	copy fasta	ATXN7L1	chr7	105599772	105881599
ATXN7L1_chr7_105599772_105881599	0/0	t0022	3121	3	3	0	0	0	0	copy fasta	ATXN7L1	chr7	105599772	105881599
ATXN7L1_chr7_105599772_105881599	0/0	t0023	3125	2	0	0	2	0	0	copy fasta	ATXN7L1	chr7	105599772	105881599
ATXN7L1_chr7_105599772_105881599	0/0	t0024	3121	2	0	0	2	0	0	copy fasta	ATXN7L1	chr7	105599772	105881599
ATXN7L1_chr7_105599772_105881599	0/0	t0025	3121	2	0	0	0	1	1	copy fasta	ATXN7L1	chr7	105599772	105881599
ATXN7L1_chr7_105599772_105881599	0/0	t0026	3127	2	0	2	0	0	0	copy fasta	ATXN7L1	chr7	105599772	105881599
ATXN7L1_chr7_105599772_105881599	0/0	t0027	3121	2	2	0	0	0	0	copy fasta	ATXN7L1	chr7	105599772	105881599
ATXN7L1_chr7_105599772_105881599	0/0	t0028	3121	2	1	0	0	0	1	copy fasta	ATXN7L1	chr7	105599772	105881599
ATXN7L1_chr7_105599772_105881599	0/0	t0029	3123	2	1	0	0	0	1	copy fasta	ATXN7L1	chr7	105599772	105881599
ATXN7L1_chr7_105599772_105881599	0/0	t0030	3123	2	2	0	0	0	0	copy fasta	ATXN7L1	chr7	105599772	105881599
ATXN7L1_chr7_105599772_105881599	0/0	t0031	3121	2	1	1	0	0	0	copy fasta	ATXN7L1	chr7	105599772	105881599
ATXN7L1_chr7_105599772_105881599	0/0	t0032	3122	2	1	1	0	0	0	copy fasta	ATXN7L1	chr7	105599772	105881599
ATXN7L1_chr7_105599772_105881599	0/0	t0033	3120	2	1	1	0	0	0	copy fasta	ATXN7L1	chr7	105599772	105881599
ATXN7L1_chr7_105599772_105881599	0/0	t0034	3123	1	1	0	0	0	0	copy fasta	ATXN7L1	chr7	105599772	105881599
ATXN7L1_chr7_105599772_105881599	0/1	t0035	3127	1	0	0	0	0	0	copy fasta	ATXN7L1	chr7	105599772	105881599
ATXN7L1_chr7_105599772_105881599	0/0	t0036	3122	1	0	0	0	1	0	copy fasta	ATXN7L1	chr7	105599772	105881599
ATXN7L1_chr7_105599772_105881599	0/0	t0037	3128	1	1	0	0	0	0	copy fasta	ATXN7L1	chr7	105599772	105881599
ATXN7L1_chr7_105599772_105881599	0/0	t0038	3120	1	0	1	0	0	0	copy fasta	ATXN7L1	chr7	105599772	105881599
ATXN7L1_chr7_105599772_105881599	0/0	t0039	3123	1	1	0	0	0	0	copy fasta	ATXN7L1	chr7	105599772	105881599
ATXN7L1_chr7_105599772_105881599	0/0	t0040	3120	1	1	0	0	0	0	copy fasta	ATXN7L1	chr7	105599772	105881599
ATXN7L1_chr7_105599772_105881599	0/0	t0041	3123	1	1	0	0	0	0	copy fasta	ATXN7L1	chr7	105599772	105881599
ATXN7L1_chr7_105599772_105881599	0/0	t0042	3122	1	0	0	1	0	0	copy fasta	ATXN7L1	chr7	105599772	105881599
ATXN7L1_chr7_105599772_105881599	0/0	t0043	3127	1	0	0	1	0	0	copy fasta	ATXN7L1	chr7	105599772	105881599
ATXN7L1_chr7_105599772_105881599	0/0	t0044	3123	1	1	0	0	0	0	copy fasta	ATXN7L1	chr7	105599772	105881599
ATXN7L1_chr7_105599772_105881599	0/0	t0045	3122	1	1	0	0	0	0	copy fasta	ATXN7L1	chr7	105599772	105881599
ATXN7L1_chr7_105599772_105881599	0/0	t0046	3119	1	1	0	0	0	0	copy fasta	ATXN7L1	chr7	105599772	105881599
ATXN7L1_chr7_105599772_105881599	0/0	t0047	3125	1	0	1	0	0	0	copy fasta	ATXN7L1	chr7	105599772	105881599
ATXN7L1_chr7_105599772_105881599	0/0	t0048	3120	1	0	0	1	0	0	copy fasta	ATXN7L1	chr7	105599772	105881599
ATXN7L1_chr7_105599772_105881599	0/0	t0049	3125	1	0	1	0	0	0	copy fasta	ATXN7L1	chr7	105599772	105881599
ATXN7L1_chr7_105599772_105881599	0/0	t0050	3126	1	0	0	0	0	1	copy fasta	ATXN7L1	chr7	105599772	105881599
ATXN7L1_chr7_105599772_105881599	0/0	t0051	3129	1	0	1	0	0	0	copy fasta	ATXN7L1	chr7	105599772	105881599
ATXN7L1_chr7_105599772_105881599	0/0	t0052	3122	1	1	0	0	0	0	copy fasta	ATXN7L1	chr7	105599772	105881599