JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RAB6D_chr2_131355492_131369168	0/0	t0021	2938	2	2	0	0	0	0	copy fasta	RAB6D	chr2	131355492	131369168
RAB6D_chr2_131355492_131369168	0/0	t0022	2938	2	1	0	1	0	0	copy fasta	RAB6D	chr2	131355492	131369168
RAB6D_chr2_131355492_131369168	0/0	t0023	2939	2	0	0	2	0	0	copy fasta	RAB6D	chr2	131355492	131369168
RAB6D_chr2_131355492_131369168	0/0	t0024	2953	2	0	0	0	0	2	copy fasta	RAB6D	chr2	131355492	131369168
RAB6D_chr2_131355492_131369168	0/0	t0025	2914	1	1	0	0	0	0	copy fasta	RAB6D	chr2	131355492	131369168
RAB6D_chr2_131355492_131369168	1/0	t0026	2913	1	0	0	0	0	0	copy fasta	RAB6D	chr2	131355492	131369168
RAB6D_chr2_131355492_131369168	0/0	t0027	2913	1	0	0	1	0	0	copy fasta	RAB6D	chr2	131355492	131369168
RAB6D_chr2_131355492_131369168	0/0	t0028	2939	1	0	0	1	0	0	copy fasta	RAB6D	chr2	131355492	131369168
RAB6D_chr2_131355492_131369168	0/0	t0029	2938	1	1	0	0	0	0	copy fasta	RAB6D	chr2	131355492	131369168
RAB6D_chr2_131355492_131369168	0/0	t0030	2937	1	0	1	0	0	0	copy fasta	RAB6D	chr2	131355492	131369168
RAB6D_chr2_131355492_131369168	0/0	t0031	2937	1	1	0	0	0	0	copy fasta	RAB6D	chr2	131355492	131369168
RAB6D_chr2_131355492_131369168	0/0	t0032	2938	1	1	0	0	0	0	copy fasta	RAB6D	chr2	131355492	131369168
RAB6D_chr2_131355492_131369168	0/0	t0033	2937	1	0	0	1	0	0	copy fasta	RAB6D	chr2	131355492	131369168
RAB6D_chr2_131355492_131369168	0/0	t0034	2939	1	0	0	1	0	0	copy fasta	RAB6D	chr2	131355492	131369168
RAB6D_chr2_131355492_131369168	0/0	t0035	2939	1	0	0	1	0	0	copy fasta	RAB6D	chr2	131355492	131369168
RAB6D_chr2_131355492_131369168	0/0	t0036	2939	1	0	0	1	0	0	copy fasta	RAB6D	chr2	131355492	131369168
RAB6D_chr2_131355492_131369168	0/0	t0037	2939	1	1	0	0	0	0	copy fasta	RAB6D	chr2	131355492	131369168
RAB6D_chr2_131355492_131369168	0/0	t0038	2939	1	0	0	0	1	0	copy fasta	RAB6D	chr2	131355492	131369168
RAB6D_chr2_131355492_131369168	0/0	t0039	2938	1	0	0	1	0	0	copy fasta	RAB6D	chr2	131355492	131369168
RAB6D_chr2_131355492_131369168	0/0	t0040	2953	1	0	0	1	0	0	copy fasta	RAB6D	chr2	131355492	131369168
RAB6D_chr2_131355492_131369168	0/0	t0041	2940	1	0	1	0	0	0	copy fasta	RAB6D	chr2	131355492	131369168
RAB6D_chr2_131355492_131369168	0/0	t0042	2939	1	1	0	0	0	0	copy fasta	RAB6D	chr2	131355492	131369168
RAB6D_chr2_131355492_131369168	0/0	t0043	2937	1	1	0	0	0	0	copy fasta	RAB6D	chr2	131355492	131369168
RAB7A_chr3_128721183_128819798	1/0	t0001	1562	223	45	51	91	13	22	copy fasta	RAB7A	chr3	128721183	128819798
RAB7A_chr3_128721183_128819798	0/0	t0002	1562	36	6	7	14	0	9	copy fasta	RAB7A	chr3	128721183	128819798
RAB7A_chr3_128721183_128819798	0/0	t0003	1562	10	10	0	0	0	0	copy fasta	RAB7A	chr3	128721183	128819798
RAB7A_chr3_128721183_128819798	0/0	t0004	1562	8	8	0	0	0	0	copy fasta	RAB7A	chr3	128721183	128819798
RAB7A_chr3_128721183_128819798	0/0	t0005	1562	7	0	5	0	1	1	copy fasta	RAB7A	chr3	128721183	128819798
RAB7A_chr3_128721183_128819798	0/0	t0006	1548	5	0	3	0	2	0	copy fasta	RAB7A	chr3	128721183	128819798
RAB7A_chr3_128721183_128819798	0/0	t0007	1564	5	5	0	0	0	0	copy fasta	RAB7A	chr3	128721183	128819798
RAB7A_chr3_128721183_128819798	0/0	t0008	1562	4	3	1	0	0	0	copy fasta	RAB7A	chr3	128721183	128819798
RAB7A_chr3_128721183_128819798	0/0	t0009	1562	3	0	1	0	0	2	copy fasta	RAB7A	chr3	128721183	128819798
RAB7A_chr3_128721183_128819798	0/0	t0010	1564	2	0	0	2	0	0	copy fasta	RAB7A	chr3	128721183	128819798
RAB7A_chr3_128721183_128819798	0/0	t0011	1562	2	0	0	0	0	2	copy fasta	RAB7A	chr3	128721183	128819798
RAB7A_chr3_128721183_128819798	0/0	t0012	1562	1	0	1	0	0	0	copy fasta	RAB7A	chr3	128721183	128819798
RAB7A_chr3_128721183_128819798	0/0	t0013	1564	1	1	0	0	0	0	copy fasta	RAB7A	chr3	128721183	128819798
RAB7A_chr3_128721183_128819798	0/0	t0014	1564	1	1	0	0	0	0	copy fasta	RAB7A	chr3	128721183	128819798
RAB7A_chr3_128721183_128819798	0/0	t0015	1562	1	0	0	1	0	0	copy fasta	RAB7A	chr3	128721183	128819798
RAB7A_chr3_128721183_128819798	0/0	t0016	1562	1	1	0	0	0	0	copy fasta	RAB7A	chr3	128721183	128819798
RAB7A_chr3_128721183_128819798	0/0	t0017	1562	1	0	1	0	0	0	copy fasta	RAB7A	chr3	128721183	128819798
RAB7A_chr3_128721183_128819798	0/0	t0018	1562	1	1	0	0	0	0	copy fasta	RAB7A	chr3	128721183	128819798
RAB7A_chr3_128721183_128819798	0/0	t0019	1550	1	1	0	0	0	0	copy fasta	RAB7A	chr3	128721183	128819798
RAB7A_chr3_128721183_128819798	0/1	t0020	1562	1	0	0	0	0	0	copy fasta	RAB7A	chr3	128721183	128819798
RAB7B_chr1_205971740_206008395	0/1	t0001	2271	183	51	42	59	9	21	copy fasta	RAB7B	chr1	205971740	206008395
RAB7B_chr1_205971740_206008395	0/0	t0002	2271	90	15	20	36	2	17	copy fasta	RAB7B	chr1	205971740	206008395
RAB7B_chr1_205971740_206008395	0/0	t0003	2271	10	10	0	0	0	0	copy fasta	RAB7B	chr1	205971740	206008395
RAB7B_chr1_205971740_206008395	0/0	t0004	2271	6	1	2	0	2	1	copy fasta	RAB7B	chr1	205971740	206008395
RAB7B_chr1_205971740_206008395	0/0	t0005	2271	6	0	6	0	0	0	copy fasta	RAB7B	chr1	205971740	206008395
RAB7B_chr1_205971740_206008395	0/0	t0006	2271	6	4	1	0	1	0	copy fasta	RAB7B	chr1	205971740	206008395
RAB7B_chr1_205971740_206008395	0/0	t0007	2268	5	3	0	0	2	0	copy fasta	RAB7B	chr1	205971740	206008395