JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RAB7B_chr1_205971740_206008395	0/0	t0008	2271	3	3	0	0	0	0	copy fasta	RAB7B	chr1	205971740	206008395
RAB7B_chr1_205971740_206008395	0/0	t0009	2268	3	3	0	0	0	0	copy fasta	RAB7B	chr1	205971740	206008395
RAB7B_chr1_205971740_206008395	0/0	t0010	2271	2	0	2	0	0	0	copy fasta	RAB7B	chr1	205971740	206008395
RAB7B_chr1_205971740_206008395	0/0	t0011	2271	2	2	0	0	0	0	copy fasta	RAB7B	chr1	205971740	206008395
RAB7B_chr1_205971740_206008395	0/0	t0012	2271	1	1	0	0	0	0	copy fasta	RAB7B	chr1	205971740	206008395
RAB7B_chr1_205971740_206008395	0/0	t0013	2271	1	1	0	0	0	0	copy fasta	RAB7B	chr1	205971740	206008395
RAB7B_chr1_205971740_206008395	0/0	t0014	2271	1	0	0	1	0	0	copy fasta	RAB7B	chr1	205971740	206008395
RAB7B_chr1_205971740_206008395	0/0	t0015	2271	1	1	0	0	0	0	copy fasta	RAB7B	chr1	205971740	206008395
RAB7B_chr1_205971740_206008395	0/0	t0016	2271	1	0	0	1	0	0	copy fasta	RAB7B	chr1	205971740	206008395
RAB7B_chr1_205971740_206008395	0/0	t0017	2271	1	0	0	1	0	0	copy fasta	RAB7B	chr1	205971740	206008395
RAB7B_chr1_205971740_206008395	0/0	t0018	2271	1	0	0	0	0	1	copy fasta	RAB7B	chr1	205971740	206008395
RAB7B_chr1_205971740_206008395	0/0	t0019	2271	1	0	1	0	0	0	copy fasta	RAB7B	chr1	205971740	206008395
RAB7B_chr1_205971740_206008395	0/0	t0020	2271	1	1	0	0	0	0	copy fasta	RAB7B	chr1	205971740	206008395
RAB7B_chr1_205971740_206008395	1/0	t0021	2271	1	0	0	0	0	0	copy fasta	RAB7B	chr1	205971740	206008395
RAB7B_chr1_205971740_206008395	0/0	t0022	2271	1	1	0	0	0	0	copy fasta	RAB7B	chr1	205971740	206008395
RAB7B_chr1_205971740_206008395	0/0	t0023	2271	1	1	0	0	0	0	copy fasta	RAB7B	chr1	205971740	206008395
RAB7B_chr1_205971740_206008395	0/0	t0024	2271	1	0	0	0	0	1	copy fasta	RAB7B	chr1	205971740	206008395
RAB7B_chr1_205971740_206008395	0/0	t0025	2271	1	0	0	0	0	1	copy fasta	RAB7B	chr1	205971740	206008395
RAB8A_chr19_16106889_16139234	1/0	t0001	1944	193	56	30	72	8	26	copy fasta	RAB8A	chr19	16106889	16139234
RAB8A_chr19_16106889_16139234	0/0	t0002	1947	89	6	21	51	2	9	copy fasta	RAB8A	chr19	16106889	16139234
RAB8A_chr19_16106889_16139234	0/1	t0003	1944	85	22	17	35	2	8	copy fasta	RAB8A	chr19	16106889	16139234
RAB8A_chr19_16106889_16139234	0/0	t0004	1944	4	0	2	2	0	0	copy fasta	RAB8A	chr19	16106889	16139234
RAB8A_chr19_16106889_16139234	0/0	t0005	1944	3	0	1	2	0	0	copy fasta	RAB8A	chr19	16106889	16139234
RAB8A_chr19_16106889_16139234	0/0	t0006	1944	3	1	0	0	0	2	copy fasta	RAB8A	chr19	16106889	16139234
RAB8A_chr19_16106889_16139234	0/0	t0007	1944	2	2	0	0	0	0	copy fasta	RAB8A	chr19	16106889	16139234
RAB8A_chr19_16106889_16139234	0/0	t0008	1944	2	0	2	0	0	0	copy fasta	RAB8A	chr19	16106889	16139234
RAB8A_chr19_16106889_16139234	0/0	t0009	1944	1	0	1	0	0	0	copy fasta	RAB8A	chr19	16106889	16139234
RAB8A_chr19_16106889_16139234	0/0	t0010	1944	1	1	0	0	0	0	copy fasta	RAB8A	chr19	16106889	16139234
RAB8A_chr19_16106889_16139234	0/0	t0011	1944	1	1	0	0	0	0	copy fasta	RAB8A	chr19	16106889	16139234
RAB8A_chr19_16106889_16139234	0/0	t0012	1944	1	1	0	0	0	0	copy fasta	RAB8A	chr19	16106889	16139234
RAB8A_chr19_16106889_16139234	0/0	t0013	1944	1	0	0	1	0	0	copy fasta	RAB8A	chr19	16106889	16139234
RAB8A_chr19_16106889_16139234	0/0	t0014	1947	1	0	0	1	0	0	copy fasta	RAB8A	chr19	16106889	16139234
RAB8A_chr19_16106889_16139234	0/0	t0015	1947	1	0	0	1	0	0	copy fasta	RAB8A	chr19	16106889	16139234
RAB8A_chr19_16106889_16139234	0/0	t0016	1944	1	0	0	0	0	1	copy fasta	RAB8A	chr19	16106889	16139234
RAB8A_chr19_16106889_16139234	0/0	t0017	1944	1	0	0	1	0	0	copy fasta	RAB8A	chr19	16106889	16139234
RAB8B_chr15_63184606_63272776	0/1	t0001	4177	147	34	36	48	6	22	copy fasta	RAB8B	chr15	63184606	63272776
RAB8B_chr15_63184606_63272776	0/0	t0002	4177	83	4	14	57	1	7	copy fasta	RAB8B	chr15	63184606	63272776
RAB8B_chr15_63184606_63272776	0/0	t0003	4178	62	7	8	43	2	2	copy fasta	RAB8B	chr15	63184606	63272776
RAB8B_chr15_63184606_63272776	0/0	t0004	4177	15	15	0	0	0	0	copy fasta	RAB8B	chr15	63184606	63272776
RAB8B_chr15_63184606_63272776	0/0	t0005	4177	6	0	0	6	0	0	copy fasta	RAB8B	chr15	63184606	63272776
RAB8B_chr15_63184606_63272776	0/0	t0006	4177	6	6	0	0	0	0	copy fasta	RAB8B	chr15	63184606	63272776
RAB8B_chr15_63184606_63272776	0/0	t0007	4178	6	6	0	0	0	0	copy fasta	RAB8B	chr15	63184606	63272776
RAB8B_chr15_63184606_63272776	0/0	t0008	4177	5	1	4	0	0	0	copy fasta	RAB8B	chr15	63184606	63272776
RAB8B_chr15_63184606_63272776	0/0	t0009	4177	5	0	0	1	0	4	copy fasta	RAB8B	chr15	63184606	63272776
RAB8B_chr15_63184606_63272776	0/0	t0010	4177	5	5	0	0	0	0	copy fasta	RAB8B	chr15	63184606	63272776
RAB8B_chr15_63184606_63272776	0/0	t0011	4177	5	5	0	0	0	0	copy fasta	RAB8B	chr15	63184606	63272776
RAB8B_chr15_63184606_63272776	0/0	t0012	4177	4	4	0	0	0	0	copy fasta	RAB8B	chr15	63184606	63272776
RAB8B_chr15_63184606_63272776	0/0	t0013	4177	3	0	0	3	0	0	copy fasta	RAB8B	chr15	63184606	63272776
RAB8B_chr15_63184606_63272776	0/0	t0014	4178	3	3	0	0	0	0	copy fasta	RAB8B	chr15	63184606	63272776
RAB8B_chr15_63184606_63272776	0/0	t0015	4177	2	0	1	0	1	0	copy fasta	RAB8B	chr15	63184606	63272776