JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RAB8B_chr15_63184606_63272776	0/0	t0016	4177	2	0	0	0	2	0	copy fasta	RAB8B	chr15	63184606	63272776
RAB8B_chr15_63184606_63272776	0/0	t0017	4177	2	0	2	0	0	0	copy fasta	RAB8B	chr15	63184606	63272776
RAB8B_chr15_63184606_63272776	0/0	t0018	4178	2	0	2	0	0	0	copy fasta	RAB8B	chr15	63184606	63272776
RAB8B_chr15_63184606_63272776	0/0	t0019	4177	1	0	0	1	0	0	copy fasta	RAB8B	chr15	63184606	63272776
RAB8B_chr15_63184606_63272776	0/0	t0020	4177	1	0	1	0	0	0	copy fasta	RAB8B	chr15	63184606	63272776
RAB8B_chr15_63184606_63272776	0/0	t0021	4177	1	0	0	0	0	1	copy fasta	RAB8B	chr15	63184606	63272776
RAB8B_chr15_63184606_63272776	0/0	t0022	4177	1	0	1	0	0	0	copy fasta	RAB8B	chr15	63184606	63272776
RAB8B_chr15_63184606_63272776	0/0	t0023	4177	1	0	1	0	0	0	copy fasta	RAB8B	chr15	63184606	63272776
RAB8B_chr15_63184606_63272776	0/0	t0024	4177	1	0	0	1	0	0	copy fasta	RAB8B	chr15	63184606	63272776
RAB8B_chr15_63184606_63272776	0/0	t0025	4178	1	1	0	0	0	0	copy fasta	RAB8B	chr15	63184606	63272776
RAB8B_chr15_63184606_63272776	1/0	t0026	4177	1	0	0	0	0	0	copy fasta	RAB8B	chr15	63184606	63272776
RAB8B_chr15_63184606_63272776	0/0	t0027	4177	1	1	0	0	0	0	copy fasta	RAB8B	chr15	63184606	63272776
RAB9A_chrX_13684128_13715504	1/1	t0001	1429	313	64	50	156	11	30	copy fasta	RAB9A	chrX	13684128	13715504
RAB9A_chrX_13684128_13715504	0/0	t0002	1429	5	4	1	0	0	0	copy fasta	RAB9A	chrX	13684128	13715504
RAB9A_chrX_13684128_13715504	0/0	t0003	1429	5	0	5	0	0	0	copy fasta	RAB9A	chrX	13684128	13715504
RAB9A_chrX_13684128_13715504	0/0	t0004	1429	3	1	2	0	0	0	copy fasta	RAB9A	chrX	13684128	13715504
RAB9A_chrX_13684128_13715504	0/0	t0005	1429	1	1	0	0	0	0	copy fasta	RAB9A	chrX	13684128	13715504
RAB9A_chrX_13684128_13715504	0/0	t0006	1429	1	0	0	0	0	1	copy fasta	RAB9A	chrX	13684128	13715504
RAB9A_chrX_13684128_13715504	0/0	t0007	1429	1	0	1	0	0	0	copy fasta	RAB9A	chrX	13684128	13715504
RAB9A_chrX_13684128_13715504	0/0	t0008	1430	1	0	1	0	0	0	copy fasta	RAB9A	chrX	13684128	13715504
RAB9A_chrX_13684128_13715504	0/0	t0009	1429	1	0	0	0	0	1	copy fasta	RAB9A	chrX	13684128	13715504
RAB9A_chrX_13684128_13715504	0/0	t0010	1429	1	1	0	0	0	0	copy fasta	RAB9A	chrX	13684128	13715504
RAB9A_chrX_13684128_13715504	0/0	t0011	1429	1	0	0	1	0	0	copy fasta	RAB9A	chrX	13684128	13715504
RAB9A_chrX_13684128_13715504	0/0	t0012	1429	1	1	0	0	0	0	copy fasta	RAB9A	chrX	13684128	13715504
RAB9B_chrX_103817327_103837257	1/1	t0001	3167	170	25	31	79	12	21	copy fasta	RAB9B	chrX	103817327	103837257
RAB9B_chrX_103817327_103837257	0/0	t0002	3167	103	13	21	60	1	8	copy fasta	RAB9B	chrX	103817327	103837257
RAB9B_chrX_103817327_103837257	0/0	t0003	3167	8	7	1	0	0	0	copy fasta	RAB9B	chrX	103817327	103837257
RAB9B_chrX_103817327_103837257	0/0	t0004	3167	7	7	0	0	0	0	copy fasta	RAB9B	chrX	103817327	103837257
RAB9B_chrX_103817327_103837257	0/0	t0005	3168	5	5	0	0	0	0	copy fasta	RAB9B	chrX	103817327	103837257
RAB9B_chrX_103817327_103837257	0/0	t0006	3167	5	0	2	3	0	0	copy fasta	RAB9B	chrX	103817327	103837257
RAB9B_chrX_103817327_103837257	0/0	t0007	3167	4	4	0	0	0	0	copy fasta	RAB9B	chrX	103817327	103837257
RAB9B_chrX_103817327_103837257	0/0	t0008	3167	2	2	0	0	0	0	copy fasta	RAB9B	chrX	103817327	103837257
RAB9B_chrX_103817327_103837257	0/0	t0009	3167	2	0	0	2	0	0	copy fasta	RAB9B	chrX	103817327	103837257
RAB9B_chrX_103817327_103837257	0/0	t0010	3167	2	2	0	0	0	0	copy fasta	RAB9B	chrX	103817327	103837257
RAB9B_chrX_103817327_103837257	0/0	t0011	3167	2	1	0	0	0	1	copy fasta	RAB9B	chrX	103817327	103837257
RAB9B_chrX_103817327_103837257	0/0	t0012	3166	1	0	0	1	0	0	copy fasta	RAB9B	chrX	103817327	103837257
RAB9B_chrX_103817327_103837257	0/0	t0013	3167	1	1	0	0	0	0	copy fasta	RAB9B	chrX	103817327	103837257
RAB9B_chrX_103817327_103837257	0/0	t0014	3167	1	0	1	0	0	0	copy fasta	RAB9B	chrX	103817327	103837257
RAB9B_chrX_103817327_103837257	0/0	t0015	3166	1	1	0	0	0	0	copy fasta	RAB9B	chrX	103817327	103837257
RAB9B_chrX_103817327_103837257	0/0	t0016	3168	1	1	0	0	0	0	copy fasta	RAB9B	chrX	103817327	103837257
RAB9B_chrX_103817327_103837257	0/0	t0017	3167	1	1	0	0	0	0	copy fasta	RAB9B	chrX	103817327	103837257
RAB9B_chrX_103817327_103837257	0/0	t0018	3167	1	0	0	0	0	1	copy fasta	RAB9B	chrX	103817327	103837257
RAB9B_chrX_103817327_103837257	0/0	t0019	3168	1	1	0	0	0	0	copy fasta	RAB9B	chrX	103817327	103837257
RAB9B_chrX_103817327_103837257	0/0	t0020	3166	1	0	0	1	0	0	copy fasta	RAB9B	chrX	103817327	103837257
RAB9B_chrX_103817327_103837257	0/0	t0021	3167	1	0	1	0	0	0	copy fasta	RAB9B	chrX	103817327	103837257
RAB9B_chrX_103817327_103837257	0/0	t0022	3164	1	0	0	1	0	0	copy fasta	RAB9B	chrX	103817327	103837257
RAB9B_chrX_103817327_103837257	0/0	t0023	3167	1	0	0	0	0	1	copy fasta	RAB9B	chrX	103817327	103837257
RAB9B_chrX_103817327_103837257	0/0	t0024	3166	1	1	0	0	0	0	copy fasta	RAB9B	chrX	103817327	103837257
RAB9B_chrX_103817327_103837257	0/0	t0025	3167	1	0	0	1	0	0	copy fasta	RAB9B	chrX	103817327	103837257
RAB9B_chrX_103817327_103837257	0/0	t0026	3167	1	0	0	1	0	0	copy fasta	RAB9B	chrX	103817327	103837257