JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RAB9B_chrX_103817327_103837257	0/0	t0027	3167	1	1	0	0	0	0	copy fasta	RAB9B	chrX	103817327	103837257
RAB9B_chrX_103817327_103837257	0/0	t0028	3166	1	1	0	0	0	0	copy fasta	RAB9B	chrX	103817327	103837257
RAB9B_chrX_103817327_103837257	0/0	t0029	3166	1	0	0	1	0	0	copy fasta	RAB9B	chrX	103817327	103837257
RAB9B_chrX_103817327_103837257	0/0	t0030	3167	1	0	0	1	0	0	copy fasta	RAB9B	chrX	103817327	103837257
RAB9B_chrX_103817327_103837257	0/0	t0031	3167	1	0	0	1	0	0	copy fasta	RAB9B	chrX	103817327	103837257
RAB9B_chrX_103817327_103837257	0/0	t0032	3168	1	0	0	1	0	0	copy fasta	RAB9B	chrX	103817327	103837257
RABAC1_chr19_41951683_41964321	0/1	t0001	193	266	61	48	121	11	24	copy fasta	RABAC1	chr19	41951683	41964321
RABAC1_chr19_41951683_41964321	1/0	t0002	193	94	10	28	38	5	12	copy fasta	RABAC1	chr19	41951683	41964321
RABAC1_chr19_41951683_41964321	0/0	t0003	193	6	6	0	0	0	0	copy fasta	RABAC1	chr19	41951683	41964321
RABAC1_chr19_41951683_41964321	0/0	t0004	193	1	1	0	0	0	0	copy fasta	RABAC1	chr19	41951683	41964321
RABAC1_chr19_41951683_41964321	0/0	t0005	193	1	0	0	1	0	0	copy fasta	RABAC1	chr19	41951683	41964321
RABEP1_chr17_5277284_5391340	0/0	t0001	3324	95	11	23	45	5	11	copy fasta	RABEP1	chr17	5277284	5391340
RABEP1_chr17_5277284_5391340	0/0	t0002	3335	38	6	5	24	1	2	copy fasta	RABEP1	chr17	5277284	5391340
RABEP1_chr17_5277284_5391340	1/0	t0003	3321	34	9	12	2	2	8	copy fasta	RABEP1	chr17	5277284	5391340
RABEP1_chr17_5277284_5391340	0/0	t0004	3324	31	12	2	14	0	3	copy fasta	RABEP1	chr17	5277284	5391340
RABEP1_chr17_5277284_5391340	0/0	t0005	3335	24	20	3	0	0	1	copy fasta	RABEP1	chr17	5277284	5391340
RABEP1_chr17_5277284_5391340	0/0	t0006	3325	23	0	0	18	0	5	copy fasta	RABEP1	chr17	5277284	5391340
RABEP1_chr17_5277284_5391340	0/0	t0007	3324	19	0	0	19	0	0	copy fasta	RABEP1	chr17	5277284	5391340
RABEP1_chr17_5277284_5391340	0/0	t0008	3325	11	0	0	11	0	0	copy fasta	RABEP1	chr17	5277284	5391340
RABEP1_chr17_5277284_5391340	0/0	t0009	3321	10	1	9	0	0	0	copy fasta	RABEP1	chr17	5277284	5391340
RABEP1_chr17_5277284_5391340	0/0	t0010	3335	8	8	0	0	0	0	copy fasta	RABEP1	chr17	5277284	5391340
RABEP1_chr17_5277284_5391340	0/0	t0011	3324	5	4	0	0	1	0	copy fasta	RABEP1	chr17	5277284	5391340
RABEP1_chr17_5277284_5391340	0/0	t0012	3334	5	4	1	0	0	0	copy fasta	RABEP1	chr17	5277284	5391340
RABEP1_chr17_5277284_5391340	0/0	t0013	3321	5	0	2	0	2	1	copy fasta	RABEP1	chr17	5277284	5391340
RABEP1_chr17_5277284_5391340	0/0	t0014	3321	4	1	0	2	0	1	copy fasta	RABEP1	chr17	5277284	5391340
RABEP1_chr17_5277284_5391340	0/0	t0015	3324	3	0	3	0	0	0	copy fasta	RABEP1	chr17	5277284	5391340
RABEP1_chr17_5277284_5391340	0/1	t0016	3333	3	0	0	0	2	0	copy fasta	RABEP1	chr17	5277284	5391340
RABEP1_chr17_5277284_5391340	0/0	t0017	3324	3	3	0	0	0	0	copy fasta	RABEP1	chr17	5277284	5391340
RABEP1_chr17_5277284_5391340	0/0	t0018	3334	2	0	2	0	0	0	copy fasta	RABEP1	chr17	5277284	5391340
RABEP1_chr17_5277284_5391340	0/0	t0019	3321	2	0	0	0	0	2	copy fasta	RABEP1	chr17	5277284	5391340
RABEP1_chr17_5277284_5391340	0/0	t0020	3324	2	2	0	0	0	0	copy fasta	RABEP1	chr17	5277284	5391340
RABEP1_chr17_5277284_5391340	0/0	t0021	3325	1	0	0	1	0	0	copy fasta	RABEP1	chr17	5277284	5391340
RABEP1_chr17_5277284_5391340	0/0	t0022	3324	1	1	0	0	0	0	copy fasta	RABEP1	chr17	5277284	5391340
RABEP1_chr17_5277284_5391340	0/0	t0023	3334	1	1	0	0	0	0	copy fasta	RABEP1	chr17	5277284	5391340
RABEP1_chr17_5277284_5391340	0/0	t0024	3324	1	1	0	0	0	0	copy fasta	RABEP1	chr17	5277284	5391340
RABEP1_chr17_5277284_5391340	0/0	t0025	3324	1	0	0	0	0	1	copy fasta	RABEP1	chr17	5277284	5391340
RABEP1_chr17_5277284_5391340	0/0	t0026	3324	1	1	0	0	0	0	copy fasta	RABEP1	chr17	5277284	5391340
RABEP1_chr17_5277284_5391340	0/0	t0027	3324	1	0	0	1	0	0	copy fasta	RABEP1	chr17	5277284	5391340
RABEP1_chr17_5277284_5391340	0/0	t0028	3324	1	0	0	1	0	0	copy fasta	RABEP1	chr17	5277284	5391340
RABEP1_chr17_5277284_5391340	0/0	t0029	3324	1	0	1	0	0	0	copy fasta	RABEP1	chr17	5277284	5391340
RABEP1_chr17_5277284_5391340	0/0	t0030	3324	1	1	0	0	0	0	copy fasta	RABEP1	chr17	5277284	5391340
RABEP1_chr17_5277284_5391340	0/0	t0031	3329	1	0	1	0	0	0	copy fasta	RABEP1	chr17	5277284	5391340
RABEP1_chr17_5277284_5391340	0/0	t0032	3325	1	0	0	1	0	0	copy fasta	RABEP1	chr17	5277284	5391340
RABEP1_chr17_5277284_5391340	0/0	t0033	3324	1	1	0	0	0	0	copy fasta	RABEP1	chr17	5277284	5391340
RABEP1_chr17_5277284_5391340	0/0	t0034	3324	1	0	0	1	0	0	copy fasta	RABEP1	chr17	5277284	5391340
RABEP1_chr17_5277284_5391340	0/0	t0035	3324	1	0	0	1	0	0	copy fasta	RABEP1	chr17	5277284	5391340
RABEP1_chr17_5277284_5391340	0/0	t0036	3324	1	0	0	0	0	1	copy fasta	RABEP1	chr17	5277284	5391340
RABEP1_chr17_5277284_5391340	0/0	t0037	3335	1	1	0	0	0	0	copy fasta	RABEP1	chr17	5277284	5391340
RABEP1_chr17_5277284_5391340	0/0	t0038	3335	1	0	0	0	1	0	copy fasta	RABEP1	chr17	5277284	5391340
RABEP1_chr17_5277284_5391340	0/0	t0039	3334	1	1	0	0	0	0	copy fasta	RABEP1	chr17	5277284	5391340