JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RABEP1_chr17_5277284_5391340	0/0	t0040	3324	1	0	0	1	0	0	copy fasta	RABEP1	chr17	5277284	5391340
RABEP1_chr17_5277284_5391340	0/0	t0041	3324	1	0	0	1	0	0	copy fasta	RABEP1	chr17	5277284	5391340
RABEP1_chr17_5277284_5391340	0/0	t0042	3324	1	1	0	0	0	0	copy fasta	RABEP1	chr17	5277284	5391340
RABEP1_chr17_5277284_5391340	0/0	t0043	3324	1	1	0	0	0	0	copy fasta	RABEP1	chr17	5277284	5391340
RABEP1_chr17_5277284_5391340	0/0	t0044	3321	1	0	0	1	0	0	copy fasta	RABEP1	chr17	5277284	5391340
RABEP1_chr17_5277284_5391340	0/0	t0045	3324	1	1	0	0	0	0	copy fasta	RABEP1	chr17	5277284	5391340
RABEP2_chr16_28899421_28930238	1/1	t0001	598	338	85	64	138	14	35	copy fasta	RABEP2	chr16	28899421	28930238
RABEP2_chr16_28899421_28930238	0/0	t0002	598	14	0	0	14	0	0	copy fasta	RABEP2	chr16	28899421	28930238
RABEP2_chr16_28899421_28930238	0/0	t0003	598	7	0	0	7	0	0	copy fasta	RABEP2	chr16	28899421	28930238
RABEP2_chr16_28899421_28930238	0/0	t0004	598	2	0	0	2	0	0	copy fasta	RABEP2	chr16	28899421	28930238
RABEP2_chr16_28899421_28930238	0/0	t0005	598	1	1	0	0	0	0	copy fasta	RABEP2	chr16	28899421	28930238
RABEP2_chr16_28899421_28930238	0/0	t0006	598	1	0	0	0	0	1	copy fasta	RABEP2	chr16	28899421	28930238
RABEP2_chr16_28899421_28930238	0/0	t0007	598	1	0	0	1	0	0	copy fasta	RABEP2	chr16	28899421	28930238
RABEP2_chr16_28899421_28930238	0/0	t0008	598	1	1	0	0	0	0	copy fasta	RABEP2	chr16	28899421	28930238
RABEP2_chr16_28899421_28930238	0/0	t0009	598	1	1	0	0	0	0	copy fasta	RABEP2	chr16	28899421	28930238
RABEPK_chr9_125195542_125239161	1/1	t0001	553	180	45	39	66	6	22	copy fasta	RABEPK	chr9	125195542	125239161
RABEPK_chr9_125195542_125239161	0/0	t0002	553	174	25	26	101	6	16	copy fasta	RABEPK	chr9	125195542	125239161
RABEPK_chr9_125195542_125239161	0/0	t0003	553	11	0	5	0	2	4	copy fasta	RABEPK	chr9	125195542	125239161
RABEPK_chr9_125195542_125239161	0/0	t0004	553	10	10	0	0	0	0	copy fasta	RABEPK	chr9	125195542	125239161
RABEPK_chr9_125195542_125239161	0/0	t0005	553	9	9	0	0	0	0	copy fasta	RABEPK	chr9	125195542	125239161
RABEPK_chr9_125195542_125239161	0/0	t0006	553	2	0	0	2	0	0	copy fasta	RABEPK	chr9	125195542	125239161
RABEPK_chr9_125195542_125239161	0/0	t0007	553	1	0	0	1	0	0	copy fasta	RABEPK	chr9	125195542	125239161
RABEPK_chr9_125195542_125239161	0/0	t0008	553	1	1	0	0	0	0	copy fasta	RABEPK	chr9	125195542	125239161
RABGAP1L_chr1_174154520_175000308	0/0	t0001	5479	56	2	11	36	2	5	copy fasta	RABGAP1L	chr1	174154520	175000308
RABGAP1L_chr1_174154520_175000308	0/0	t0002	5476	44	5	14	14	6	5	copy fasta	RABGAP1L	chr1	174154520	175000308
RABGAP1L_chr1_174154520_175000308	0/0	t0003	5478	43	5	2	29	1	6	copy fasta	RABGAP1L	chr1	174154520	175000308
RABGAP1L_chr1_174154520_175000308	0/0	t0004	5476	40	0	4	27	1	8	copy fasta	RABGAP1L	chr1	174154520	175000308
RABGAP1L_chr1_174154520_175000308	0/0	t0005	5469	11	10	1	0	0	0	copy fasta	RABGAP1L	chr1	174154520	175000308
RABGAP1L_chr1_174154520_175000308	0/0	t0006	5469	10	10	0	0	0	0	copy fasta	RABGAP1L	chr1	174154520	175000308
RABGAP1L_chr1_174154520_175000308	0/0	t0007	5473	7	5	2	0	0	0	copy fasta	RABGAP1L	chr1	174154520	175000308
RABGAP1L_chr1_174154520_175000308	0/0	t0008	5470	6	0	2	0	2	2	copy fasta	RABGAP1L	chr1	174154520	175000308
RABGAP1L_chr1_174154520_175000308	0/0	t0009	5470	6	0	0	0	0	6	copy fasta	RABGAP1L	chr1	174154520	175000308
RABGAP1L_chr1_174154520_175000308	0/0	t0010	5477	5	5	0	0	0	0	copy fasta	RABGAP1L	chr1	174154520	175000308
RABGAP1L_chr1_174154520_175000308	0/0	t0011	5469	4	3	1	0	0	0	copy fasta	RABGAP1L	chr1	174154520	175000308
RABGAP1L_chr1_174154520_175000308	0/0	t0012	5469	3	3	0	0	0	0	copy fasta	RABGAP1L	chr1	174154520	175000308
RABGAP1L_chr1_174154520_175000308	0/0	t0013	5476	3	3	0	0	0	0	copy fasta	RABGAP1L	chr1	174154520	175000308
RABGAP1L_chr1_174154520_175000308	0/0	t0014	5476	3	1	2	0	0	0	copy fasta	RABGAP1L	chr1	174154520	175000308
RABGAP1L_chr1_174154520_175000308	0/0	t0015	5476	3	3	0	0	0	0	copy fasta	RABGAP1L	chr1	174154520	175000308
RABGAP1L_chr1_174154520_175000308	0/0	t0016	5470	2	0	1	0	1	0	copy fasta	RABGAP1L	chr1	174154520	175000308
RABGAP1L_chr1_174154520_175000308	0/0	t0017	5476	2	2	0	0	0	0	copy fasta	RABGAP1L	chr1	174154520	175000308
RABGAP1L_chr1_174154520_175000308	0/0	t0018	5476	2	0	0	2	0	0	copy fasta	RABGAP1L	chr1	174154520	175000308
RABGAP1L_chr1_174154520_175000308	0/0	t0019	5473	1	1	0	0	0	0	copy fasta	RABGAP1L	chr1	174154520	175000308
RABGAP1L_chr1_174154520_175000308	0/0	t0020	5473	1	1	0	0	0	0	copy fasta	RABGAP1L	chr1	174154520	175000308
RABGAP1L_chr1_174154520_175000308	0/0	t0021	5476	1	0	1	0	0	0	copy fasta	RABGAP1L	chr1	174154520	175000308
RABGAP1L_chr1_174154520_175000308	0/0	t0022	5469	1	1	0	0	0	0	copy fasta	RABGAP1L	chr1	174154520	175000308
RABGAP1L_chr1_174154520_175000308	0/0	t0023	5469	1	1	0	0	0	0	copy fasta	RABGAP1L	chr1	174154520	175000308
RABGAP1L_chr1_174154520_175000308	0/0	t0024	5478	1	1	0	0	0	0	copy fasta	RABGAP1L	chr1	174154520	175000308
RABGAP1L_chr1_174154520_175000308	0/0	t0025	5469	1	1	0	0	0	0	copy fasta	RABGAP1L	chr1	174154520	175000308
RABGAP1L_chr1_174154520_175000308	0/0	t0026	5469	1	1	0	0	0	0	copy fasta	RABGAP1L	chr1	174154520	175000308
RABGAP1L_chr1_174154520_175000308	0/0	t0027	5469	1	1	0	0	0	0	copy fasta	RABGAP1L	chr1	174154520	175000308