JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RABGAP1L_chr1_174154520_175000308	0/0	t0028	5472	1	1	0	0	0	0	copy fasta	RABGAP1L	chr1	174154520	175000308
RABGAP1L_chr1_174154520_175000308	0/0	t0029	5477	1	1	0	0	0	0	copy fasta	RABGAP1L	chr1	174154520	175000308
RABGAP1L_chr1_174154520_175000308	0/0	t0030	5478	1	0	1	0	0	0	copy fasta	RABGAP1L	chr1	174154520	175000308
RABGAP1L_chr1_174154520_175000308	0/0	t0031	5480	1	0	0	1	0	0	copy fasta	RABGAP1L	chr1	174154520	175000308
RABGAP1L_chr1_174154520_175000308	0/0	t0032	5476	1	1	0	0	0	0	copy fasta	RABGAP1L	chr1	174154520	175000308
RABGAP1L_chr1_174154520_175000308	0/0	t0033	5479	1	0	1	0	0	0	copy fasta	RABGAP1L	chr1	174154520	175000308
RABGAP1L_chr1_174154520_175000308	0/0	t0034	5479	1	0	0	0	0	1	copy fasta	RABGAP1L	chr1	174154520	175000308
RABGAP1L_chr1_174154520_175000308	0/0	t0035	5479	1	0	0	0	0	1	copy fasta	RABGAP1L	chr1	174154520	175000308
RABGAP1L_chr1_174154520_175000308	0/0	t0036	5479	1	0	0	1	0	0	copy fasta	RABGAP1L	chr1	174154520	175000308
RABGAP1L_chr1_174154520_175000308	0/0	t0037	5479	1	0	0	1	0	0	copy fasta	RABGAP1L	chr1	174154520	175000308
RABGAP1L_chr1_174154520_175000308	0/0	t0038	5479	1	0	0	0	1	0	copy fasta	RABGAP1L	chr1	174154520	175000308
RABGAP1L_chr1_174154520_175000308	0/0	t0039	5476	1	0	1	0	0	0	copy fasta	RABGAP1L	chr1	174154520	175000308
RABGAP1L_chr1_174154520_175000308	0/0	t0040	5476	1	0	0	1	0	0	copy fasta	RABGAP1L	chr1	174154520	175000308
RABGAP1_chr9_122936020_123109866	0/0	t0001	1764	7	0	3	0	2	2	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0002	1778	7	0	0	7	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0003	1786	7	0	4	3	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0004	1782	7	1	1	5	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0005	1769	7	0	0	6	0	1	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0006	1768	6	0	1	4	0	1	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0007	1780	6	1	1	4	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0008	1748	5	4	1	0	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0009	1766	5	5	0	0	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0010	1746	4	1	2	0	1	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0011	1770	4	4	0	0	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0012	1766	4	1	2	0	0	1	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0013	1778	4	0	2	1	0	1	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0014	1784	4	0	4	0	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0015	1790	4	0	0	1	2	1	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0016	1792	4	0	4	0	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0017	1760	3	2	1	0	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0018	1764	3	2	1	0	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0019	1766	3	2	1	0	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0020	1760	3	1	2	0	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0021	1768	3	3	0	0	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0022	1764	3	0	0	3	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0023	1770	3	3	0	0	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0024	1770	3	0	0	3	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0025	1774	3	1	0	1	0	1	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/1	t0026	1772	3	0	1	0	0	1	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0027	1782	3	0	1	1	0	1	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0028	1778	3	3	0	0	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	1/0	t0029	1777	3	2	0	0	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0030	1788	3	0	1	2	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0031	1784	3	0	0	3	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0032	1800	3	0	0	3	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0033	1750	2	2	0	0	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0034	1768	2	2	0	0	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0035	1762	2	1	0	0	1	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0036	1772	2	2	0	0	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0037	1772	2	1	1	0	0	0	copy fasta	RABGAP1	chr9	122936020	123109866