JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RABGAP1_chr9_122936020_123109866	0/0	t0038	1770	2	0	0	2	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0039	1776	2	1	1	0	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0040	1772	2	0	1	1	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0041	1780	2	0	0	2	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0042	1773	2	2	0	0	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0043	1784	2	0	2	0	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0044	1776	2	2	0	0	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0045	1786	2	1	0	1	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0046	1796	2	0	1	1	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0047	1800	2	0	1	1	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0048	1780	2	0	0	2	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0049	1773	2	0	0	2	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0050	1767	2	0	0	2	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0051	1777	2	2	0	0	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0052	1773	2	0	0	1	1	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0053	1770	1	0	0	1	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0054	1770	1	0	0	1	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0055	1796	1	0	0	1	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0056	1752	1	0	0	1	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0057	1754	1	0	0	1	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0058	1762	1	0	0	0	0	1	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0059	1764	1	1	0	0	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0060	1762	1	0	0	1	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0061	1760	1	0	1	0	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0062	1762	1	1	0	0	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0063	1770	1	1	0	0	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0064	1768	1	0	0	1	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0065	1772	1	1	0	0	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0066	1774	1	1	0	0	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0067	1769	1	0	1	0	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0068	1768	1	0	0	1	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0069	1764	1	0	1	0	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0070	1774	1	1	0	0	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0071	1758	1	0	0	1	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0072	1768	1	0	0	1	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0073	1768	1	0	0	0	0	1	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0074	1770	1	0	1	0	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0075	1776	1	0	1	0	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0076	1782	1	0	0	1	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0077	1772	1	0	0	1	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0078	1776	1	0	0	1	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0079	1775	1	1	0	0	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0080	1778	1	0	0	1	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0081	1778	1	0	0	1	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0082	1777	1	1	0	0	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0083	1782	1	0	0	0	0	1	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0084	1780	1	1	0	0	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0085	1782	1	0	0	0	1	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0086	1781	1	1	0	0	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0087	1784	1	0	0	1	0	0	copy fasta	RABGAP1	chr9	122936020	123109866