JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RABGAP1_chr9_122936020_123109866	0/0	t0088	1786	1	0	0	1	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0089	1784	1	1	0	0	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0090	1794	1	0	1	0	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0091	1783	1	1	0	0	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0092	1788	1	1	0	0	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0093	1790	1	0	0	1	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0094	1776	1	0	0	1	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0095	1788	1	1	0	0	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0096	1790	1	1	0	0	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0097	1794	1	0	0	1	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0098	1790	1	0	0	1	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0099	1798	1	0	0	1	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0100	1789	1	1	0	0	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0101	1791	1	0	1	0	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0102	1792	1	0	0	1	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0103	1798	1	0	0	1	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0104	1798	1	0	0	1	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0105	1808	1	0	1	0	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0106	1790	1	0	0	1	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0107	1798	1	0	0	1	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0108	1800	1	0	0	0	0	1	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0109	1796	1	1	0	0	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0110	1802	1	0	0	1	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0111	1802	1	0	0	1	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0112	1798	1	0	1	0	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0113	1798	1	1	0	0	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0114	1806	1	0	0	1	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0115	1808	1	0	0	1	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0116	1802	1	0	0	1	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0117	1804	1	0	0	1	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0118	1806	1	0	0	1	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0119	1798	1	0	1	0	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0120	1738	1	0	0	0	1	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0121	1773	1	1	0	0	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0122	1765	1	0	0	1	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0123	1767	1	0	0	1	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0124	1763	1	0	0	1	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0125	1768	1	0	0	1	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0126	1771	1	0	0	1	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0127	1775	1	0	0	0	0	1	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0128	1779	1	1	0	0	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0129	1779	1	0	0	1	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0130	1784	1	0	0	0	1	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0131	1784	1	0	1	0	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0132	1776	1	0	0	1	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0133	1776	1	0	0	1	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0134	1778	1	0	0	1	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0135	1782	1	0	0	1	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0136	1784	1	0	0	0	0	1	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	t0137	1786	1	0	1	0	0	0	copy fasta	RABGAP1	chr9	122936020	123109866