JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RABL2A_chr2_113622266_113648392	0/0	t0001	1453	139	46	14	72	3	4	copy fasta	RABL2A	chr2	113622266	113648392
RABL2A_chr2_113622266_113648392	1/1	t0002	1452	91	2	27	49	0	11	copy fasta	RABL2A	chr2	113622266	113648392
RABL2A_chr2_113622266_113648392	0/0	t0003	1452	57	22	18	5	5	7	copy fasta	RABL2A	chr2	113622266	113648392
RABL2A_chr2_113622266_113648392	0/0	t0004	1452	47	0	4	33	2	8	copy fasta	RABL2A	chr2	113622266	113648392
RABL2A_chr2_113622266_113648392	0/0	t0005	1453	27	2	0	20	2	3	copy fasta	RABL2A	chr2	113622266	113648392
RABL2A_chr2_113622266_113648392	0/0	t0006	1453	23	2	4	5	4	8	copy fasta	RABL2A	chr2	113622266	113648392
RABL2A_chr2_113622266_113648392	0/0	t0007	1452	7	6	1	0	0	0	copy fasta	RABL2A	chr2	113622266	113648392
RABL2A_chr2_113622266_113648392	0/0	t0008	1452	6	4	0	0	0	2	copy fasta	RABL2A	chr2	113622266	113648392
RABL2A_chr2_113622266_113648392	0/0	t0009	1453	5	0	5	0	0	0	copy fasta	RABL2A	chr2	113622266	113648392
RABL2A_chr2_113622266_113648392	0/0	t0010	1453	4	1	0	2	0	1	copy fasta	RABL2A	chr2	113622266	113648392
RABL2A_chr2_113622266_113648392	0/0	t0011	1452	4	0	0	4	0	0	copy fasta	RABL2A	chr2	113622266	113648392
RABL2A_chr2_113622266_113648392	0/0	t0012	1451	3	3	0	0	0	0	copy fasta	RABL2A	chr2	113622266	113648392
RABL2A_chr2_113622266_113648392	0/0	t0013	1452	2	2	0	0	0	0	copy fasta	RABL2A	chr2	113622266	113648392
RABL2A_chr2_113622266_113648392	0/0	t0014	1453	2	0	0	0	2	0	copy fasta	RABL2A	chr2	113622266	113648392
RABL2A_chr2_113622266_113648392	0/0	t0015	1453	2	1	0	1	0	0	copy fasta	RABL2A	chr2	113622266	113648392
RABL2A_chr2_113622266_113648392	0/0	t0016	1453	2	0	0	2	0	0	copy fasta	RABL2A	chr2	113622266	113648392
RABL2A_chr2_113622266_113648392	0/0	t0017	1453	2	0	0	2	0	0	copy fasta	RABL2A	chr2	113622266	113648392
RABL2A_chr2_113622266_113648392	0/0	t0018	1452	2	0	0	2	0	0	copy fasta	RABL2A	chr2	113622266	113648392
RABL2A_chr2_113622266_113648392	0/0	t0019	1452	2	0	0	0	0	2	copy fasta	RABL2A	chr2	113622266	113648392
RABL2A_chr2_113622266_113648392	0/0	t0020	1451	1	1	0	0	0	0	copy fasta	RABL2A	chr2	113622266	113648392
RABL2A_chr2_113622266_113648392	0/0	t0021	1453	1	1	0	0	0	0	copy fasta	RABL2A	chr2	113622266	113648392
RABL2A_chr2_113622266_113648392	0/0	t0022	1453	1	0	0	1	0	0	copy fasta	RABL2A	chr2	113622266	113648392
RABL2A_chr2_113622266_113648392	0/0	t0023	1452	1	1	0	0	0	0	copy fasta	RABL2A	chr2	113622266	113648392
RABL2A_chr2_113622266_113648392	0/0	t0024	1452	1	0	0	1	0	0	copy fasta	RABL2A	chr2	113622266	113648392
RABL2A_chr2_113622266_113648392	0/0	t0025	1452	1	1	0	0	0	0	copy fasta	RABL2A	chr2	113622266	113648392
RABL2A_chr2_113622266_113648392	0/0	t0026	1452	1	1	0	0	0	0	copy fasta	RABL2A	chr2	113622266	113648392
RABL2A_chr2_113622266_113648392	0/0	t0027	1452	1	0	1	0	0	0	copy fasta	RABL2A	chr2	113622266	113648392
RABL2A_chr2_113622266_113648392	0/0	t0028	1452	1	0	0	1	0	0	copy fasta	RABL2A	chr2	113622266	113648392
RABL2B_chr22_50762506_50788636	1/0	t0001	1460	138	20	30	66	1	20	copy fasta	RABL2B	chr22	50762506	50788636
RABL2B_chr22_50762506_50788636	0/0	t0002	1460	81	12	13	44	6	6	copy fasta	RABL2B	chr22	50762506	50788636
RABL2B_chr22_50762506_50788636	0/0	t0003	1460	68	0	17	39	1	11	copy fasta	RABL2B	chr22	50762506	50788636
RABL2B_chr22_50762506_50788636	0/0	t0004	1459	54	4	5	40	2	3	copy fasta	RABL2B	chr22	50762506	50788636
RABL2B_chr22_50762506_50788636	0/0	t0005	1460	37	6	11	16	3	1	copy fasta	RABL2B	chr22	50762506	50788636
RABL2B_chr22_50762506_50788636	0/0	t0006	1459	15	10	1	4	0	0	copy fasta	RABL2B	chr22	50762506	50788636
RABL2B_chr22_50762506_50788636	0/0	t0007	1460	14	11	2	0	1	0	copy fasta	RABL2B	chr22	50762506	50788636
RABL2B_chr22_50762506_50788636	0/0	t0008	1459	8	8	0	0	0	0	copy fasta	RABL2B	chr22	50762506	50788636
RABL2B_chr22_50762506_50788636	0/0	t0009	1460	8	0	0	7	1	0	copy fasta	RABL2B	chr22	50762506	50788636
RABL2B_chr22_50762506_50788636	0/0	t0010	1460	4	0	0	4	0	0	copy fasta	RABL2B	chr22	50762506	50788636
RABL2B_chr22_50762506_50788636	0/0	t0011	1459	4	0	0	1	3	0	copy fasta	RABL2B	chr22	50762506	50788636
RABL2B_chr22_50762506_50788636	0/0	t0012	1460	3	3	0	0	0	0	copy fasta	RABL2B	chr22	50762506	50788636
RABL2B_chr22_50762506_50788636	0/0	t0013	1460	3	3	0	0	0	0	copy fasta	RABL2B	chr22	50762506	50788636
RABL2B_chr22_50762506_50788636	0/0	t0014	1460	3	0	0	3	0	0	copy fasta	RABL2B	chr22	50762506	50788636
RABL2B_chr22_50762506_50788636	0/0	t0015	1459	2	1	0	1	0	0	copy fasta	RABL2B	chr22	50762506	50788636
RABL2B_chr22_50762506_50788636	0/0	t0016	1460	2	0	2	0	0	0	copy fasta	RABL2B	chr22	50762506	50788636
RABL2B_chr22_50762506_50788636	0/0	t0017	1460	2	1	1	0	0	0	copy fasta	RABL2B	chr22	50762506	50788636
RABL2B_chr22_50762506_50788636	0/0	t0018	1460	2	2	0	0	0	0	copy fasta	RABL2B	chr22	50762506	50788636
RABL2B_chr22_50762506_50788636	0/0	t0019	1460	2	2	0	0	0	0	copy fasta	RABL2B	chr22	50762506	50788636
RABL2B_chr22_50762506_50788636	0/0	t0020	1459	2	2	0	0	0	0	copy fasta	RABL2B	chr22	50762506	50788636
RABL2B_chr22_50762506_50788636	0/0	t0021	1460	2	0	0	2	0	0	copy fasta	RABL2B	chr22	50762506	50788636
RABL2B_chr22_50762506_50788636	0/0	t0022	1460	1	1	0	0	0	0	copy fasta	RABL2B	chr22	50762506	50788636