Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ATXN7L1_chr7_105599772_105881599	0/0	t0053	3120	1	1	0	0	0	0	copy fasta	ATXN7L1	chr7	105599772	105881599
ATXN7L1_chr7_105599772_105881599	0/0	t0054	3121	1	0	0	1	0	0	copy fasta	ATXN7L1	chr7	105599772	105881599
ATXN7L1_chr7_105599772_105881599	0/0	t0055	3126	1	1	0	0	0	0	copy fasta	ATXN7L1	chr7	105599772	105881599
ATXN7L1_chr7_105599772_105881599	0/0	t0056	3125	1	1	0	0	0	0	copy fasta	ATXN7L1	chr7	105599772	105881599
ATXN7L1_chr7_105599772_105881599	0/0	t0057	3123	1	0	1	0	0	0	copy fasta	ATXN7L1	chr7	105599772	105881599
ATXN7L1_chr7_105599772_105881599	0/0	t0058	3120	1	0	0	0	0	1	copy fasta	ATXN7L1	chr7	105599772	105881599
ATXN7L1_chr7_105599772_105881599	0/0	t0059	3123	1	1	0	0	0	0	copy fasta	ATXN7L1	chr7	105599772	105881599
ATXN7L1_chr7_105599772_105881599	0/0	t0060	3124	1	1	0	0	0	0	copy fasta	ATXN7L1	chr7	105599772	105881599
ATXN7L1_chr7_105599772_105881599	0/0	t0061	3119	1	0	1	0	0	0	copy fasta	ATXN7L1	chr7	105599772	105881599
ATXN7L1_chr7_105599772_105881599	0/0	t0062	3123	1	0	0	1	0	0	copy fasta	ATXN7L1	chr7	105599772	105881599
ATXN7L1_chr7_105599772_105881599	0/0	t0063	3124	1	1	0	0	0	0	copy fasta	ATXN7L1	chr7	105599772	105881599
ATXN7L1_chr7_105599772_105881599	0/0	t0064	3120	1	0	0	1	0	0	copy fasta	ATXN7L1	chr7	105599772	105881599
ATXN7L2_chr1_109478905_109497734	1/1	t0001	184	215	20	47	114	8	24	copy fasta	ATXN7L2	chr1	109478905	109497734
ATXN7L2_chr1_109478905_109497734	0/0	t0002	183	115	76	13	4	6	16	copy fasta	ATXN7L2	chr1	109478905	109497734
ATXN7L2_chr1_109478905_109497734	0/0	t0003	183	2	2	0	0	0	0	copy fasta	ATXN7L2	chr1	109478905	109497734
ATXN7L3B_chr12_74532835_74550430	0/1	t0001	7300	113	8	27	55	5	17	copy fasta	ATXN7L3B	chr12	74532835	74550430
ATXN7L3B_chr12_74532835_74550430	0/0	t0002	7292	90	1	10	72	0	7	copy fasta	ATXN7L3B	chr12	74532835	74550430
ATXN7L3B_chr12_74532835_74550430	0/0	t0003	7300	20	1	3	13	0	3	copy fasta	ATXN7L3B	chr12	74532835	74550430
ATXN7L3B_chr12_74532835_74550430	0/0	t0004	7299	13	12	1	0	0	0	copy fasta	ATXN7L3B	chr12	74532835	74550430
ATXN7L3B_chr12_74532835_74550430	0/0	t0005	7294	13	5	8	0	0	0	copy fasta	ATXN7L3B	chr12	74532835	74550430
ATXN7L3B_chr12_74532835_74550430	0/0	t0006	7298	10	10	0	0	0	0	copy fasta	ATXN7L3B	chr12	74532835	74550430
ATXN7L3B_chr12_74532835_74550430	0/0	t0007	7301	10	0	3	7	0	0	copy fasta	ATXN7L3B	chr12	74532835	74550430
ATXN7L3B_chr12_74532835_74550430	0/0	t0008	7298	9	0	0	8	0	1	copy fasta	ATXN7L3B	chr12	74532835	74550430
ATXN7L3B_chr12_74532835_74550430	0/0	t0009	7296	7	1	3	0	1	2	copy fasta	ATXN7L3B	chr12	74532835	74550430
ATXN7L3B_chr12_74532835_74550430	0/0	t0010	7299	6	6	0	0	0	0	copy fasta	ATXN7L3B	chr12	74532835	74550430
ATXN7L3B_chr12_74532835_74550430	0/0	t0011	7299	6	0	2	0	0	4	copy fasta	ATXN7L3B	chr12	74532835	74550430
ATXN7L3B_chr12_74532835_74550430	0/0	t0012	7290	5	4	1	0	0	0	copy fasta	ATXN7L3B	chr12	74532835	74550430
ATXN7L3B_chr12_74532835_74550430	0/0	t0013	7290	5	4	1	0	0	0	copy fasta	ATXN7L3B	chr12	74532835	74550430
ATXN7L3B_chr12_74532835_74550430	0/0	t0014	7298	5	3	2	0	0	0	copy fasta	ATXN7L3B	chr12	74532835	74550430
ATXN7L3B_chr12_74532835_74550430	0/0	t0015	7293	5	0	0	5	0	0	copy fasta	ATXN7L3B	chr12	74532835	74550430
ATXN7L3B_chr12_74532835_74550430	0/0	t0016	7301	5	1	2	0	2	0	copy fasta	ATXN7L3B	chr12	74532835	74550430
ATXN7L3B_chr12_74532835_74550430	0/0	t0017	7292	4	0	0	4	0	0	copy fasta	ATXN7L3B	chr12	74532835	74550430
ATXN7L3B_chr12_74532835_74550430	0/0	t0018	7295	4	0	1	1	0	2	copy fasta	ATXN7L3B	chr12	74532835	74550430
ATXN7L3B_chr12_74532835_74550430	0/0	t0019	7301	3	0	0	3	0	0	copy fasta	ATXN7L3B	chr12	74532835	74550430
ATXN7L3B_chr12_74532835_74550430	0/0	t0020	7290	3	3	0	0	0	0	copy fasta	ATXN7L3B	chr12	74532835	74550430
ATXN7L3B_chr12_74532835_74550430	0/0	t0021	7298	3	3	0	0	0	0	copy fasta	ATXN7L3B	chr12	74532835	74550430
ATXN7L3B_chr12_74532835_74550430	0/0	t0022	7303	3	3	0	0	0	0	copy fasta	ATXN7L3B	chr12	74532835	74550430
ATXN7L3B_chr12_74532835_74550430	0/0	t0023	7299	2	2	0	0	0	0	copy fasta	ATXN7L3B	chr12	74532835	74550430
ATXN7L3B_chr12_74532835_74550430	0/0	t0024	7300	2	0	0	0	0	2	copy fasta	ATXN7L3B	chr12	74532835	74550430
ATXN7L3B_chr12_74532835_74550430	0/0	t0025	7301	2	1	1	0	0	0	copy fasta	ATXN7L3B	chr12	74532835	74550430
ATXN7L3B_chr12_74532835_74550430	0/0	t0026	7300	2	0	2	0	0	0	copy fasta	ATXN7L3B	chr12	74532835	74550430
ATXN7L3B_chr12_74532835_74550430	0/0	t0027	7300	2	0	0	2	0	0	copy fasta	ATXN7L3B	chr12	74532835	74550430
ATXN7L3B_chr12_74532835_74550430	0/0	t0028	7297	2	2	0	0	0	0	copy fasta	ATXN7L3B	chr12	74532835	74550430
ATXN7L3B_chr12_74532835_74550430	0/0	t0029	7292	2	2	0	0	0	0	copy fasta	ATXN7L3B	chr12	74532835	74550430
ATXN7L3B_chr12_74532835_74550430	0/0	t0030	7290	2	2	0	0	0	0	copy fasta	ATXN7L3B	chr12	74532835	74550430
ATXN7L3B_chr12_74532835_74550430	0/0	t0031	7300	1	1	0	0	0	0	copy fasta	ATXN7L3B	chr12	74532835	74550430
ATXN7L3B_chr12_74532835_74550430	0/0	t0032	7290	1	1	0	0	0	0	copy fasta	ATXN7L3B	chr12	74532835	74550430
ATXN7L3B_chr12_74532835_74550430	0/0	t0033	7299	1	1	0	0	0	0	copy fasta	ATXN7L3B	chr12	74532835	74550430
ATXN7L3B_chr12_74532835_74550430	0/0	t0034	7301	1	0	0	1	0	0	copy fasta	ATXN7L3B	chr12	74532835	74550430
ATXN7L3B_chr12_74532835_74550430	0/0	t0035	7298	1	1	0	0	0	0	copy fasta	ATXN7L3B	chr12	74532835	74550430