JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RABL2B_chr22_50762506_50788636	0/0	t0023	1460	1	1	0	0	0	0	copy fasta	RABL2B	chr22	50762506	50788636
RABL2B_chr22_50762506_50788636	0/0	t0024	1459	1	1	0	0	0	0	copy fasta	RABL2B	chr22	50762506	50788636
RABL2B_chr22_50762506_50788636	0/0	t0025	1459	1	1	0	0	0	0	copy fasta	RABL2B	chr22	50762506	50788636
RABL2B_chr22_50762506_50788636	0/0	t0026	1460	1	1	0	0	0	0	copy fasta	RABL2B	chr22	50762506	50788636
RABL2B_chr22_50762506_50788636	0/0	t0027	1460	1	1	0	0	0	0	copy fasta	RABL2B	chr22	50762506	50788636
RABL2B_chr22_50762506_50788636	0/1	t0028	1460	1	0	0	0	0	0	copy fasta	RABL2B	chr22	50762506	50788636
RABL2B_chr22_50762506_50788636	0/0	t0029	1460	1	0	0	1	0	0	copy fasta	RABL2B	chr22	50762506	50788636
RABL2B_chr22_50762506_50788636	0/0	t0030	1460	1	1	0	0	0	0	copy fasta	RABL2B	chr22	50762506	50788636
RABL2B_chr22_50762506_50788636	0/0	t0031	1460	1	1	0	0	0	0	copy fasta	RABL2B	chr22	50762506	50788636
RABL2B_chr22_50762506_50788636	0/0	t0032	1460	1	1	0	0	0	0	copy fasta	RABL2B	chr22	50762506	50788636
RABL2B_chr22_50762506_50788636	0/0	t0033	1460	1	1	0	0	0	0	copy fasta	RABL2B	chr22	50762506	50788636
RABL2B_chr22_50762506_50788636	0/0	t0034	1460	1	0	0	0	0	1	copy fasta	RABL2B	chr22	50762506	50788636
RABL2B_chr22_50762506_50788636	0/0	t0035	1460	1	0	0	0	0	1	copy fasta	RABL2B	chr22	50762506	50788636
RABL2B_chr22_50762506_50788636	0/0	t0036	1460	1	0	0	0	0	1	copy fasta	RABL2B	chr22	50762506	50788636
RABL2B_chr22_50762506_50788636	0/0	t0037	1460	1	1	0	0	0	0	copy fasta	RABL2B	chr22	50762506	50788636
RABL2B_chr22_50762506_50788636	0/0	t0038	1460	1	1	0	0	0	0	copy fasta	RABL2B	chr22	50762506	50788636
RABL2B_chr22_50762506_50788636	0/0	t0039	1460	1	1	0	0	0	0	copy fasta	RABL2B	chr22	50762506	50788636
RABL2B_chr22_50762506_50788636	0/0	t0040	1460	1	0	0	1	0	0	copy fasta	RABL2B	chr22	50762506	50788636
RABL2B_chr22_50762506_50788636	0/0	t0041	1459	1	0	0	1	0	0	copy fasta	RABL2B	chr22	50762506	50788636
RABL2B_chr22_50762506_50788636	0/0	t0042	1460	1	0	0	1	0	0	copy fasta	RABL2B	chr22	50762506	50788636
RABL2B_chr22_50762506_50788636	0/0	t0043	1460	1	0	0	1	0	0	copy fasta	RABL2B	chr22	50762506	50788636
RABL3_chr3_120679938_120747516	0/0	t0001	4896	39	2	8	27	0	2	copy fasta	RABL3	chr3	120679938	120747516
RABL3_chr3_120679938_120747516	0/0	t0002	4895	39	0	3	31	1	4	copy fasta	RABL3	chr3	120679938	120747516
RABL3_chr3_120679938_120747516	0/0	t0003	4896	31	0	6	21	1	3	copy fasta	RABL3	chr3	120679938	120747516
RABL3_chr3_120679938_120747516	0/0	t0004	4894	29	3	11	4	6	5	copy fasta	RABL3	chr3	120679938	120747516
RABL3_chr3_120679938_120747516	0/0	t0005	4895	19	1	0	13	0	5	copy fasta	RABL3	chr3	120679938	120747516
RABL3_chr3_120679938_120747516	0/0	t0006	4894	17	1	1	14	1	0	copy fasta	RABL3	chr3	120679938	120747516
RABL3_chr3_120679938_120747516	0/0	t0007	4895	11	11	0	0	0	0	copy fasta	RABL3	chr3	120679938	120747516
RABL3_chr3_120679938_120747516	0/0	t0008	4895	11	9	0	0	0	2	copy fasta	RABL3	chr3	120679938	120747516
RABL3_chr3_120679938_120747516	0/0	t0009	4895	10	0	8	0	1	1	copy fasta	RABL3	chr3	120679938	120747516
RABL3_chr3_120679938_120747516	0/0	t0010	4895	8	1	6	0	0	1	copy fasta	RABL3	chr3	120679938	120747516
RABL3_chr3_120679938_120747516	0/1	t0011	4895	8	4	2	0	0	1	copy fasta	RABL3	chr3	120679938	120747516
RABL3_chr3_120679938_120747516	0/0	t0012	4895	7	4	0	1	1	1	copy fasta	RABL3	chr3	120679938	120747516
RABL3_chr3_120679938_120747516	0/0	t0013	4895	7	1	0	6	0	0	copy fasta	RABL3	chr3	120679938	120747516
RABL3_chr3_120679938_120747516	0/0	t0014	4895	7	0	7	0	0	0	copy fasta	RABL3	chr3	120679938	120747516
RABL3_chr3_120679938_120747516	0/0	t0015	4895	5	0	5	0	0	0	copy fasta	RABL3	chr3	120679938	120747516
RABL3_chr3_120679938_120747516	0/0	t0016	4895	5	0	0	5	0	0	copy fasta	RABL3	chr3	120679938	120747516
RABL3_chr3_120679938_120747516	1/0	t0017	4895	5	3	1	0	0	0	copy fasta	RABL3	chr3	120679938	120747516
RABL3_chr3_120679938_120747516	0/0	t0018	4895	4	4	0	0	0	0	copy fasta	RABL3	chr3	120679938	120747516
RABL3_chr3_120679938_120747516	0/0	t0019	4894	4	0	0	2	0	2	copy fasta	RABL3	chr3	120679938	120747516
RABL3_chr3_120679938_120747516	0/0	t0020	4894	4	0	0	3	0	1	copy fasta	RABL3	chr3	120679938	120747516
RABL3_chr3_120679938_120747516	0/0	t0021	4894	4	0	0	3	0	1	copy fasta	RABL3	chr3	120679938	120747516
RABL3_chr3_120679938_120747516	0/0	t0022	4895	3	0	0	3	0	0	copy fasta	RABL3	chr3	120679938	120747516
RABL3_chr3_120679938_120747516	0/0	t0023	4894	3	0	0	3	0	0	copy fasta	RABL3	chr3	120679938	120747516
RABL3_chr3_120679938_120747516	0/0	t0024	4895	3	3	0	0	0	0	copy fasta	RABL3	chr3	120679938	120747516
RABL3_chr3_120679938_120747516	0/0	t0025	4895	3	0	2	0	1	0	copy fasta	RABL3	chr3	120679938	120747516
RABL3_chr3_120679938_120747516	0/0	t0026	4895	3	2	1	0	0	0	copy fasta	RABL3	chr3	120679938	120747516
RABL3_chr3_120679938_120747516	0/0	t0027	4896	3	0	1	2	0	0	copy fasta	RABL3	chr3	120679938	120747516
RABL3_chr3_120679938_120747516	0/0	t0028	4897	3	0	0	0	2	1	copy fasta	RABL3	chr3	120679938	120747516
RABL3_chr3_120679938_120747516	0/0	t0029	4895	3	3	0	0	0	0	copy fasta	RABL3	chr3	120679938	120747516