JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RABL3_chr3_120679938_120747516	0/0	t0030	4896	2	0	0	2	0	0	copy fasta	RABL3	chr3	120679938	120747516
RABL3_chr3_120679938_120747516	0/0	t0031	4895	2	1	1	0	0	0	copy fasta	RABL3	chr3	120679938	120747516
RABL3_chr3_120679938_120747516	0/0	t0032	4894	2	0	0	0	0	2	copy fasta	RABL3	chr3	120679938	120747516
RABL3_chr3_120679938_120747516	0/0	t0033	4896	2	2	0	0	0	0	copy fasta	RABL3	chr3	120679938	120747516
RABL3_chr3_120679938_120747516	0/0	t0034	4895	2	0	1	1	0	0	copy fasta	RABL3	chr3	120679938	120747516
RABL3_chr3_120679938_120747516	0/0	t0035	4894	2	2	0	0	0	0	copy fasta	RABL3	chr3	120679938	120747516
RABL3_chr3_120679938_120747516	0/0	t0036	4895	2	2	0	0	0	0	copy fasta	RABL3	chr3	120679938	120747516
RABL3_chr3_120679938_120747516	0/0	t0037	4895	2	2	0	0	0	0	copy fasta	RABL3	chr3	120679938	120747516
RABL3_chr3_120679938_120747516	0/0	t0038	4896	2	2	0	0	0	0	copy fasta	RABL3	chr3	120679938	120747516
RABL3_chr3_120679938_120747516	0/0	t0039	4895	2	2	0	0	0	0	copy fasta	RABL3	chr3	120679938	120747516
RABL3_chr3_120679938_120747516	0/0	t0040	4895	1	0	0	1	0	0	copy fasta	RABL3	chr3	120679938	120747516
RABL3_chr3_120679938_120747516	0/0	t0041	4896	1	0	0	1	0	0	copy fasta	RABL3	chr3	120679938	120747516
RABL3_chr3_120679938_120747516	0/0	t0042	4896	1	0	0	0	0	1	copy fasta	RABL3	chr3	120679938	120747516
RABL3_chr3_120679938_120747516	0/0	t0043	4895	1	0	1	0	0	0	copy fasta	RABL3	chr3	120679938	120747516
RABL3_chr3_120679938_120747516	0/0	t0044	4896	1	0	0	1	0	0	copy fasta	RABL3	chr3	120679938	120747516
RABL3_chr3_120679938_120747516	0/0	t0045	4895	1	0	0	1	0	0	copy fasta	RABL3	chr3	120679938	120747516
RABL3_chr3_120679938_120747516	0/0	t0046	4894	1	0	0	1	0	0	copy fasta	RABL3	chr3	120679938	120747516
RABL3_chr3_120679938_120747516	0/0	t0047	4897	1	0	0	1	0	0	copy fasta	RABL3	chr3	120679938	120747516
RABL3_chr3_120679938_120747516	0/0	t0048	4896	1	0	0	1	0	0	copy fasta	RABL3	chr3	120679938	120747516
RABL3_chr3_120679938_120747516	0/0	t0049	4895	1	1	0	0	0	0	copy fasta	RABL3	chr3	120679938	120747516
RABL3_chr3_120679938_120747516	0/0	t0050	4896	1	1	0	0	0	0	copy fasta	RABL3	chr3	120679938	120747516
RABL3_chr3_120679938_120747516	0/0	t0051	4895	1	0	1	0	0	0	copy fasta	RABL3	chr3	120679938	120747516
RABL3_chr3_120679938_120747516	0/0	t0052	4895	1	1	0	0	0	0	copy fasta	RABL3	chr3	120679938	120747516
RABL3_chr3_120679938_120747516	0/0	t0053	4894	1	1	0	0	0	0	copy fasta	RABL3	chr3	120679938	120747516
RABL3_chr3_120679938_120747516	0/0	t0054	4896	1	1	0	0	0	0	copy fasta	RABL3	chr3	120679938	120747516
RABL3_chr3_120679938_120747516	0/0	t0055	4894	1	0	0	0	0	1	copy fasta	RABL3	chr3	120679938	120747516
RABL3_chr3_120679938_120747516	0/0	t0056	4895	1	1	0	0	0	0	copy fasta	RABL3	chr3	120679938	120747516
RABL3_chr3_120679938_120747516	0/0	t0057	4895	1	0	0	0	0	1	copy fasta	RABL3	chr3	120679938	120747516
RABL3_chr3_120679938_120747516	0/0	t0058	4896	1	0	0	0	0	1	copy fasta	RABL3	chr3	120679938	120747516
RABL3_chr3_120679938_120747516	0/0	t0059	4896	1	1	0	0	0	0	copy fasta	RABL3	chr3	120679938	120747516
RABL3_chr3_120679938_120747516	0/0	t0060	4895	1	1	0	0	0	0	copy fasta	RABL3	chr3	120679938	120747516
RABL3_chr3_120679938_120747516	0/0	t0061	4895	1	1	0	0	0	0	copy fasta	RABL3	chr3	120679938	120747516
RABL3_chr3_120679938_120747516	0/0	t0062	4896	1	0	0	0	0	1	copy fasta	RABL3	chr3	120679938	120747516
RABL3_chr3_120679938_120747516	0/0	t0063	4896	1	0	0	1	0	0	copy fasta	RABL3	chr3	120679938	120747516
RABL3_chr3_120679938_120747516	0/0	t0064	4895	1	0	1	0	0	0	copy fasta	RABL3	chr3	120679938	120747516
RABL3_chr3_120679938_120747516	0/0	t0065	4895	1	0	0	0	0	1	copy fasta	RABL3	chr3	120679938	120747516
RABL3_chr3_120679938_120747516	0/0	t0066	4896	1	0	0	1	0	0	copy fasta	RABL3	chr3	120679938	120747516
RABL3_chr3_120679938_120747516	0/0	t0067	4896	1	0	0	1	0	0	copy fasta	RABL3	chr3	120679938	120747516
RABL3_chr3_120679938_120747516	0/0	t0068	4895	1	0	0	0	0	1	copy fasta	RABL3	chr3	120679938	120747516
RABL3_chr3_120679938_120747516	0/0	t0069	4897	1	0	0	0	0	1	copy fasta	RABL3	chr3	120679938	120747516
RABL3_chr3_120679938_120747516	0/0	t0070	4895	1	1	0	0	0	0	copy fasta	RABL3	chr3	120679938	120747516
RABL3_chr3_120679938_120747516	0/0	t0071	4895	1	1	0	0	0	0	copy fasta	RABL3	chr3	120679938	120747516
RABL3_chr3_120679938_120747516	0/0	t0072	4896	1	1	0	0	0	0	copy fasta	RABL3	chr3	120679938	120747516
RABL3_chr3_120679938_120747516	0/0	t0073	4895	1	1	0	0	0	0	copy fasta	RABL3	chr3	120679938	120747516
RABL3_chr3_120679938_120747516	0/0	t0074	4894	1	0	1	0	0	0	copy fasta	RABL3	chr3	120679938	120747516
RABL3_chr3_120679938_120747516	0/0	t0075	4896	1	0	0	1	0	0	copy fasta	RABL3	chr3	120679938	120747516
RABL6_chr9_136802948_136846187	1/1	t0001	915	254	72	50	94	7	29	copy fasta	RABL6	chr9	136802948	136846187
RABL6_chr9_136802948_136846187	0/0	t0002	915	51	1	17	21	5	7	copy fasta	RABL6	chr9	136802948	136846187
RABL6_chr9_136802948_136846187	0/0	t0003	915	5	0	0	5	0	0	copy fasta	RABL6	chr9	136802948	136846187
RABL6_chr9_136802948_136846187	0/0	t0004	915	5	0	0	5	0	0	copy fasta	RABL6	chr9	136802948	136846187