JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RABL6_chr9_136802948_136846187	0/0	t0005	915	4	4	0	0	0	0	copy fasta	RABL6	chr9	136802948	136846187
RABL6_chr9_136802948_136846187	0/0	t0006	915	4	0	0	4	0	0	copy fasta	RABL6	chr9	136802948	136846187
RABL6_chr9_136802948_136846187	0/0	t0007	915	3	0	0	3	0	0	copy fasta	RABL6	chr9	136802948	136846187
RABL6_chr9_136802948_136846187	0/0	t0008	915	1	0	1	0	0	0	copy fasta	RABL6	chr9	136802948	136846187
RABL6_chr9_136802948_136846187	0/0	t0009	915	1	0	0	1	0	0	copy fasta	RABL6	chr9	136802948	136846187
RABL6_chr9_136802948_136846187	0/0	t0010	915	1	0	0	1	0	0	copy fasta	RABL6	chr9	136802948	136846187
RABL6_chr9_136802948_136846187	0/0	t0011	915	1	1	0	0	0	0	copy fasta	RABL6	chr9	136802948	136846187
RAC1_chr7_6369527_6408967	1/1	t0001	1731	70	5	26	19	5	13	copy fasta	RAC1	chr7	6369527	6408967
RAC1_chr7_6369527_6408967	0/0	t0002	1735	24	9	9	5	1	0	copy fasta	RAC1	chr7	6369527	6408967
RAC1_chr7_6369527_6408967	0/0	t0003	1731	19	1	1	14	0	3	copy fasta	RAC1	chr7	6369527	6408967
RAC1_chr7_6369527_6408967	0/0	t0004	1729	19	0	2	12	3	2	copy fasta	RAC1	chr7	6369527	6408967
RAC1_chr7_6369527_6408967	0/0	t0005	1730	18	2	3	9	3	1	copy fasta	RAC1	chr7	6369527	6408967
RAC1_chr7_6369527_6408967	0/0	t0006	1733	17	2	2	11	0	2	copy fasta	RAC1	chr7	6369527	6408967
RAC1_chr7_6369527_6408967	0/0	t0007	1732	17	0	0	16	0	1	copy fasta	RAC1	chr7	6369527	6408967
RAC1_chr7_6369527_6408967	0/0	t0008	1721	17	4	1	8	0	4	copy fasta	RAC1	chr7	6369527	6408967
RAC1_chr7_6369527_6408967	0/0	t0009	1731	15	1	3	11	0	0	copy fasta	RAC1	chr7	6369527	6408967
RAC1_chr7_6369527_6408967	0/0	t0010	1723	12	0	3	7	0	2	copy fasta	RAC1	chr7	6369527	6408967
RAC1_chr7_6369527_6408967	0/0	t0011	1734	9	0	0	8	0	1	copy fasta	RAC1	chr7	6369527	6408967
RAC1_chr7_6369527_6408967	0/0	t0012	1724	9	9	0	0	0	0	copy fasta	RAC1	chr7	6369527	6408967
RAC1_chr7_6369527_6408967	0/0	t0013	1733	7	0	0	6	0	1	copy fasta	RAC1	chr7	6369527	6408967
RAC1_chr7_6369527_6408967	0/0	t0014	1728	7	1	3	2	0	1	copy fasta	RAC1	chr7	6369527	6408967
RAC1_chr7_6369527_6408967	0/0	t0015	1724	7	2	0	4	0	1	copy fasta	RAC1	chr7	6369527	6408967
RAC1_chr7_6369527_6408967	0/0	t0016	1734	7	7	0	0	0	0	copy fasta	RAC1	chr7	6369527	6408967
RAC1_chr7_6369527_6408967	0/0	t0017	1722	7	2	0	5	0	0	copy fasta	RAC1	chr7	6369527	6408967
RAC1_chr7_6369527_6408967	0/0	t0018	1738	6	0	1	4	0	1	copy fasta	RAC1	chr7	6369527	6408967
RAC1_chr7_6369527_6408967	0/0	t0019	1722	6	4	0	2	0	0	copy fasta	RAC1	chr7	6369527	6408967
RAC1_chr7_6369527_6408967	0/0	t0020	1721	6	3	0	0	0	3	copy fasta	RAC1	chr7	6369527	6408967
RAC1_chr7_6369527_6408967	0/0	t0021	1734	6	5	1	0	0	0	copy fasta	RAC1	chr7	6369527	6408967
RAC1_chr7_6369527_6408967	0/0	t0022	1731	6	1	3	0	1	1	copy fasta	RAC1	chr7	6369527	6408967
RAC1_chr7_6369527_6408967	0/0	t0023	1732	5	0	0	5	0	0	copy fasta	RAC1	chr7	6369527	6408967
RAC1_chr7_6369527_6408967	0/0	t0024	1725	5	5	0	0	0	0	copy fasta	RAC1	chr7	6369527	6408967
RAC1_chr7_6369527_6408967	0/0	t0025	1746	3	0	0	3	0	0	copy fasta	RAC1	chr7	6369527	6408967
RAC1_chr7_6369527_6408967	0/0	t0026	1742	3	0	1	2	0	0	copy fasta	RAC1	chr7	6369527	6408967
RAC1_chr7_6369527_6408967	0/0	t0027	1728	3	3	0	0	0	0	copy fasta	RAC1	chr7	6369527	6408967
RAC1_chr7_6369527_6408967	0/0	t0028	1725	3	3	0	0	0	0	copy fasta	RAC1	chr7	6369527	6408967
RAC1_chr7_6369527_6408967	0/0	t0029	1722	3	3	0	0	0	0	copy fasta	RAC1	chr7	6369527	6408967
RAC1_chr7_6369527_6408967	0/0	t0030	1730	3	0	3	0	0	0	copy fasta	RAC1	chr7	6369527	6408967
RAC1_chr7_6369527_6408967	0/0	t0031	1733	3	2	1	0	0	0	copy fasta	RAC1	chr7	6369527	6408967
RAC1_chr7_6369527_6408967	0/0	t0032	1732	3	3	0	0	0	0	copy fasta	RAC1	chr7	6369527	6408967
RAC1_chr7_6369527_6408967	0/0	t0033	1719	3	0	1	0	1	1	copy fasta	RAC1	chr7	6369527	6408967
RAC1_chr7_6369527_6408967	0/0	t0034	1745	2	0	1	0	0	1	copy fasta	RAC1	chr7	6369527	6408967
RAC1_chr7_6369527_6408967	0/0	t0035	1744	2	1	0	1	0	0	copy fasta	RAC1	chr7	6369527	6408967
RAC1_chr7_6369527_6408967	0/0	t0036	1742	2	0	0	2	0	0	copy fasta	RAC1	chr7	6369527	6408967
RAC1_chr7_6369527_6408967	0/0	t0037	1730	2	0	0	1	0	1	copy fasta	RAC1	chr7	6369527	6408967
RAC1_chr7_6369527_6408967	0/0	t0038	1723	2	2	0	0	0	0	copy fasta	RAC1	chr7	6369527	6408967
RAC1_chr7_6369527_6408967	0/0	t0039	1722	2	2	0	0	0	0	copy fasta	RAC1	chr7	6369527	6408967
RAC1_chr7_6369527_6408967	0/0	t0040	1735	2	0	0	0	0	2	copy fasta	RAC1	chr7	6369527	6408967
RAC1_chr7_6369527_6408967	0/0	t0041	1731	2	2	0	0	0	0	copy fasta	RAC1	chr7	6369527	6408967
RAC1_chr7_6369527_6408967	0/0	t0042	1718	2	0	0	2	0	0	copy fasta	RAC1	chr7	6369527	6408967
RAC1_chr7_6369527_6408967	0/0	t0043	1731	2	0	2	0	0	0	copy fasta	RAC1	chr7	6369527	6408967