JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RAC1_chr7_6369527_6408967	0/0	t0044	1751	1	0	0	1	0	0	copy fasta	RAC1	chr7	6369527	6408967
RAC1_chr7_6369527_6408967	0/0	t0045	1743	1	0	1	0	0	0	copy fasta	RAC1	chr7	6369527	6408967
RAC1_chr7_6369527_6408967	0/0	t0046	1741	1	1	0	0	0	0	copy fasta	RAC1	chr7	6369527	6408967
RAC1_chr7_6369527_6408967	0/0	t0047	1731	1	0	0	1	0	0	copy fasta	RAC1	chr7	6369527	6408967
RAC1_chr7_6369527_6408967	0/0	t0048	1729	1	0	0	1	0	0	copy fasta	RAC1	chr7	6369527	6408967
RAC1_chr7_6369527_6408967	0/0	t0049	1725	1	1	0	0	0	0	copy fasta	RAC1	chr7	6369527	6408967
RAC1_chr7_6369527_6408967	0/0	t0050	1725	1	0	1	0	0	0	copy fasta	RAC1	chr7	6369527	6408967
RAC1_chr7_6369527_6408967	0/0	t0051	1724	1	0	1	0	0	0	copy fasta	RAC1	chr7	6369527	6408967
RAC1_chr7_6369527_6408967	0/0	t0052	1723	1	0	0	1	0	0	copy fasta	RAC1	chr7	6369527	6408967
RAC1_chr7_6369527_6408967	0/0	t0053	1723	1	0	1	0	0	0	copy fasta	RAC1	chr7	6369527	6408967
RAC1_chr7_6369527_6408967	0/0	t0054	1719	1	0	0	1	0	0	copy fasta	RAC1	chr7	6369527	6408967
RAC1_chr7_6369527_6408967	0/0	t0055	1723	1	0	0	0	0	1	copy fasta	RAC1	chr7	6369527	6408967
RAC1_chr7_6369527_6408967	0/0	t0056	1732	1	1	0	0	0	0	copy fasta	RAC1	chr7	6369527	6408967
RAC1_chr7_6369527_6408967	0/0	t0057	1719	1	0	0	1	0	0	copy fasta	RAC1	chr7	6369527	6408967
RAC1_chr7_6369527_6408967	0/0	t0058	1731	1	1	0	0	0	0	copy fasta	RAC1	chr7	6369527	6408967
RAC1_chr7_6369527_6408967	0/0	t0059	1718	1	0	0	1	0	0	copy fasta	RAC1	chr7	6369527	6408967
RAC1_chr7_6369527_6408967	0/0	t0060	1730	1	1	0	0	0	0	copy fasta	RAC1	chr7	6369527	6408967
RAC1_chr7_6369527_6408967	0/0	t0061	1730	1	1	0	0	0	0	copy fasta	RAC1	chr7	6369527	6408967
RAC1_chr7_6369527_6408967	0/0	t0062	1734	1	1	0	0	0	0	copy fasta	RAC1	chr7	6369527	6408967
RAC1_chr7_6369527_6408967	0/0	t0063	1732	1	1	0	0	0	0	copy fasta	RAC1	chr7	6369527	6408967
RAC1_chr7_6369527_6408967	0/0	t0064	1731	1	1	0	0	0	0	copy fasta	RAC1	chr7	6369527	6408967
RAC1_chr7_6369527_6408967	0/0	t0065	1719	1	0	1	0	0	0	copy fasta	RAC1	chr7	6369527	6408967
RAC1_chr7_6369527_6408967	0/0	t0066	1731	1	0	0	0	0	1	copy fasta	RAC1	chr7	6369527	6408967
RAC1_chr7_6369527_6408967	0/0	t0067	1731	1	1	0	0	0	0	copy fasta	RAC1	chr7	6369527	6408967
RAC2_chr22_37220270_37249269	0/1	t0001	894	148	18	44	68	8	9	copy fasta	RAC2	chr22	37220270	37249269
RAC2_chr22_37220270_37249269	1/0	t0002	894	110	22	16	48	3	20	copy fasta	RAC2	chr22	37220270	37249269
RAC2_chr22_37220270_37249269	0/0	t0003	894	92	20	6	57	1	8	copy fasta	RAC2	chr22	37220270	37249269
RAC2_chr22_37220270_37249269	0/0	t0004	894	43	0	5	30	3	5	copy fasta	RAC2	chr22	37220270	37249269
RAC2_chr22_37220270_37249269	0/0	t0005	894	26	17	1	3	2	3	copy fasta	RAC2	chr22	37220270	37249269
RAC2_chr22_37220270_37249269	0/0	t0006	894	6	6	0	0	0	0	copy fasta	RAC2	chr22	37220270	37249269
RAC2_chr22_37220270_37249269	0/0	t0007	894	5	5	0	0	0	0	copy fasta	RAC2	chr22	37220270	37249269
RAC2_chr22_37220270_37249269	0/0	t0008	894	5	4	1	0	0	0	copy fasta	RAC2	chr22	37220270	37249269
RAC2_chr22_37220270_37249269	0/0	t0009	894	4	3	1	0	0	0	copy fasta	RAC2	chr22	37220270	37249269
RAC2_chr22_37220270_37249269	0/0	t0010	894	2	0	1	0	1	0	copy fasta	RAC2	chr22	37220270	37249269
RAC2_chr22_37220270_37249269	0/0	t0011	894	1	1	0	0	0	0	copy fasta	RAC2	chr22	37220270	37249269
RAC2_chr22_37220270_37249269	0/0	t0012	894	1	0	0	0	0	1	copy fasta	RAC2	chr22	37220270	37249269
RAC2_chr22_37220270_37249269	0/0	t0013	894	1	0	0	1	0	0	copy fasta	RAC2	chr22	37220270	37249269
RAC2_chr22_37220270_37249269	0/0	t0014	894	1	0	0	1	0	0	copy fasta	RAC2	chr22	37220270	37249269
RAC2_chr22_37220270_37249269	0/0	t0015	894	1	0	1	0	0	0	copy fasta	RAC2	chr22	37220270	37249269
RAC2_chr22_37220270_37249269	0/0	t0016	894	1	1	0	0	0	0	copy fasta	RAC2	chr22	37220270	37249269
RAC2_chr22_37220270_37249269	0/0	t0017	894	1	1	0	0	0	0	copy fasta	RAC2	chr22	37220270	37249269
RAC3_chr17_82026678_82039204	1/1	t0001	460	395	89	74	169	14	47	copy fasta	RAC3	chr17	82026678	82039204
RAC3_chr17_82026678_82039204	0/0	t0002	460	3	3	0	0	0	0	copy fasta	RAC3	chr17	82026678	82039204
RAC3_chr17_82026678_82039204	0/0	t0003	460	1	1	0	0	0	0	copy fasta	RAC3	chr17	82026678	82039204
RAC3_chr17_82026678_82039204	0/0	t0004	460	1	1	0	0	0	0	copy fasta	RAC3	chr17	82026678	82039204
RAC3_chr17_82026678_82039204	0/0	t0005	460	1	0	0	1	0	0	copy fasta	RAC3	chr17	82026678	82039204
RAC3_chr17_82026678_82039204	0/0	t0006	460	1	0	1	0	0	0	copy fasta	RAC3	chr17	82026678	82039204
RAC3_chr17_82026678_82039204	0/0	t0007	460	1	0	0	0	0	1	copy fasta	RAC3	chr17	82026678	82039204
RAC3_chr17_82026678_82039204	0/0	t0008	460	1	0	1	0	0	0	copy fasta	RAC3	chr17	82026678	82039204
RACGAP1_chr12_49984162_50030494	0/1	t0001	1208	310	85	66	126	4	28	copy fasta	RACGAP1	chr12	49984162	50030494