JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RACGAP1_chr12_49984162_50030494	1/0	t0002	1208	4	2	1	0	0	0	copy fasta	RACGAP1	chr12	49984162	50030494
RACGAP1_chr12_49984162_50030494	0/0	t0003	1208	3	3	0	0	0	0	copy fasta	RACGAP1	chr12	49984162	50030494
RACGAP1_chr12_49984162_50030494	0/0	t0004	1208	2	2	0	0	0	0	copy fasta	RACGAP1	chr12	49984162	50030494
RACGAP1_chr12_49984162_50030494	0/0	t0005	1208	1	1	0	0	0	0	copy fasta	RACGAP1	chr12	49984162	50030494
RACGAP1_chr12_49984162_50030494	0/0	t0006	1208	1	0	1	0	0	0	copy fasta	RACGAP1	chr12	49984162	50030494
RACGAP1_chr12_49984162_50030494	0/0	t0007	1208	1	0	0	1	0	0	copy fasta	RACGAP1	chr12	49984162	50030494
RACGAP1_chr12_49984162_50030494	0/0	t0008	1208	1	0	0	1	0	0	copy fasta	RACGAP1	chr12	49984162	50030494
RACGAP1_chr12_49984162_50030494	0/0	t0009	1208	1	1	0	0	0	0	copy fasta	RACGAP1	chr12	49984162	50030494
RACK1_chr5_181231897_181248906	1/1	t0001	187	280	35	60	134	16	33	copy fasta	RACK1	chr5	181231897	181248906
RACK1_chr5_181231897_181248906	0/0	t0002	188	95	31	6	53	0	5	copy fasta	RACK1	chr5	181231897	181248906
RACK1_chr5_181231897_181248906	0/0	t0003	187	17	4	2	6	0	5	copy fasta	RACK1	chr5	181231897	181248906
RACK1_chr5_181231897_181248906	0/0	t0004	188	16	15	1	0	0	0	copy fasta	RACK1	chr5	181231897	181248906
RACK1_chr5_181231897_181248906	0/0	t0005	189	8	5	2	0	0	1	copy fasta	RACK1	chr5	181231897	181248906
RACK1_chr5_181231897_181248906	0/0	t0006	187	7	6	1	0	0	0	copy fasta	RACK1	chr5	181231897	181248906
RACK1_chr5_181231897_181248906	0/0	t0007	187	3	3	0	0	0	0	copy fasta	RACK1	chr5	181231897	181248906
RACK1_chr5_181231897_181248906	0/0	t0008	188	1	0	0	1	0	0	copy fasta	RACK1	chr5	181231897	181248906
RACK1_chr5_181231897_181248906	0/0	t0009	187	1	0	1	0	0	0	copy fasta	RACK1	chr5	181231897	181248906
RACK1_chr5_181231897_181248906	0/0	t0010	188	1	1	0	0	0	0	copy fasta	RACK1	chr5	181231897	181248906
RACK1_chr5_181231897_181248906	0/0	t0011	187	1	0	1	0	0	0	copy fasta	RACK1	chr5	181231897	181248906
RAD17_chr5_69364818_69419801	0/1	t0001	1042	268	50	55	133	7	22	copy fasta	RAD17	chr5	69364818	69419801
RAD17_chr5_69364818_69419801	0/0	t0002	1042	84	31	12	30	1	10	copy fasta	RAD17	chr5	69364818	69419801
RAD17_chr5_69364818_69419801	0/0	t0003	1042	3	0	3	0	0	0	copy fasta	RAD17	chr5	69364818	69419801
RAD17_chr5_69364818_69419801	0/0	t0004	1042	1	0	0	1	0	0	copy fasta	RAD17	chr5	69364818	69419801
RAD17_chr5_69364818_69419801	0/0	t0005	1042	1	0	0	1	0	0	copy fasta	RAD17	chr5	69364818	69419801
RAD17_chr5_69364818_69419801	0/0	t0006	1042	1	1	0	0	0	0	copy fasta	RAD17	chr5	69364818	69419801
RAD17_chr5_69364818_69419801	0/0	t0007	1042	1	0	0	1	0	0	copy fasta	RAD17	chr5	69364818	69419801
RAD18_chr3_8872075_8968472	0/1	t0001	4370	122	14	32	56	2	17	copy fasta	RAD18	chr3	8872075	8968472
RAD18_chr3_8872075_8968472	0/0	t0002	4370	78	14	6	55	1	2	copy fasta	RAD18	chr3	8872075	8968472
RAD18_chr3_8872075_8968472	0/0	t0003	4370	32	3	0	29	0	0	copy fasta	RAD18	chr3	8872075	8968472
RAD18_chr3_8872075_8968472	0/0	t0004	4370	19	5	5	3	2	4	copy fasta	RAD18	chr3	8872075	8968472
RAD18_chr3_8872075_8968472	0/0	t0005	4370	10	7	3	0	0	0	copy fasta	RAD18	chr3	8872075	8968472
RAD18_chr3_8872075_8968472	0/0	t0006	4370	9	9	0	0	0	0	copy fasta	RAD18	chr3	8872075	8968472
RAD18_chr3_8872075_8968472	0/0	t0007	4370	7	7	0	0	0	0	copy fasta	RAD18	chr3	8872075	8968472
RAD18_chr3_8872075_8968472	0/0	t0008	4370	6	0	3	0	0	3	copy fasta	RAD18	chr3	8872075	8968472
RAD18_chr3_8872075_8968472	0/0	t0009	4370	6	0	6	0	0	0	copy fasta	RAD18	chr3	8872075	8968472
RAD18_chr3_8872075_8968472	0/0	t0010	4371	4	4	0	0	0	0	copy fasta	RAD18	chr3	8872075	8968472
RAD18_chr3_8872075_8968472	0/0	t0011	4370	4	0	0	4	0	0	copy fasta	RAD18	chr3	8872075	8968472
RAD18_chr3_8872075_8968472	0/0	t0012	4370	4	4	0	0	0	0	copy fasta	RAD18	chr3	8872075	8968472
RAD18_chr3_8872075_8968472	0/0	t0013	4370	3	0	0	2	0	1	copy fasta	RAD18	chr3	8872075	8968472
RAD18_chr3_8872075_8968472	0/0	t0014	4369	2	2	0	0	0	0	copy fasta	RAD18	chr3	8872075	8968472
RAD18_chr3_8872075_8968472	0/0	t0015	4370	2	2	0	0	0	0	copy fasta	RAD18	chr3	8872075	8968472
RAD18_chr3_8872075_8968472	0/0	t0016	4370	2	2	0	0	0	0	copy fasta	RAD18	chr3	8872075	8968472
RAD18_chr3_8872075_8968472	0/0	t0017	4370	2	0	0	2	0	0	copy fasta	RAD18	chr3	8872075	8968472
RAD18_chr3_8872075_8968472	0/0	t0018	4370	2	2	0	0	0	0	copy fasta	RAD18	chr3	8872075	8968472
RAD18_chr3_8872075_8968472	0/0	t0019	4370	2	0	0	2	0	0	copy fasta	RAD18	chr3	8872075	8968472
RAD18_chr3_8872075_8968472	0/0	t0020	4370	2	2	0	0	0	0	copy fasta	RAD18	chr3	8872075	8968472
RAD18_chr3_8872075_8968472	0/0	t0021	4371	1	1	0	0	0	0	copy fasta	RAD18	chr3	8872075	8968472
RAD18_chr3_8872075_8968472	0/0	t0022	4370	1	1	0	0	0	0	copy fasta	RAD18	chr3	8872075	8968472
RAD18_chr3_8872075_8968472	0/0	t0023	4370	1	1	0	0	0	0	copy fasta	RAD18	chr3	8872075	8968472
RAD18_chr3_8872075_8968472	0/0	t0024	4369	1	1	0	0	0	0	copy fasta	RAD18	chr3	8872075	8968472