JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RAD18_chr3_8872075_8968472	0/0	t0025	4370	1	1	0	0	0	0	copy fasta	RAD18	chr3	8872075	8968472
RAD18_chr3_8872075_8968472	0/0	t0026	4369	1	0	1	0	0	0	copy fasta	RAD18	chr3	8872075	8968472
RAD18_chr3_8872075_8968472	0/0	t0027	4370	1	1	0	0	0	0	copy fasta	RAD18	chr3	8872075	8968472
RAD18_chr3_8872075_8968472	0/0	t0028	4370	1	0	0	0	0	1	copy fasta	RAD18	chr3	8872075	8968472
RAD18_chr3_8872075_8968472	0/0	t0029	4370	1	0	0	1	0	0	copy fasta	RAD18	chr3	8872075	8968472
RAD18_chr3_8872075_8968472	0/0	t0030	4370	1	0	0	0	0	1	copy fasta	RAD18	chr3	8872075	8968472
RAD18_chr3_8872075_8968472	0/0	t0031	4370	1	0	0	1	0	0	copy fasta	RAD18	chr3	8872075	8968472
RAD18_chr3_8872075_8968472	0/0	t0032	4370	1	1	0	0	0	0	copy fasta	RAD18	chr3	8872075	8968472
RAD18_chr3_8872075_8968472	0/0	t0033	4371	1	0	0	0	0	1	copy fasta	RAD18	chr3	8872075	8968472
RAD18_chr3_8872075_8968472	0/0	t0034	4371	1	1	0	0	0	0	copy fasta	RAD18	chr3	8872075	8968472
RAD18_chr3_8872075_8968472	0/0	t0035	4370	1	1	0	0	0	0	copy fasta	RAD18	chr3	8872075	8968472
RAD18_chr3_8872075_8968472	0/0	t0036	4370	1	1	0	0	0	0	copy fasta	RAD18	chr3	8872075	8968472
RAD18_chr3_8872075_8968472	0/0	t0037	4370	1	1	0	0	0	0	copy fasta	RAD18	chr3	8872075	8968472
RAD18_chr3_8872075_8968472	0/0	t0038	4370	1	0	0	1	0	0	copy fasta	RAD18	chr3	8872075	8968472
RAD18_chr3_8872075_8968472	0/0	t0039	4370	1	0	1	0	0	0	copy fasta	RAD18	chr3	8872075	8968472
RAD18_chr3_8872075_8968472	1/0	t0040	4370	1	0	0	0	0	0	copy fasta	RAD18	chr3	8872075	8968472
RAD18_chr3_8872075_8968472	0/0	t0041	4370	1	0	0	1	0	0	copy fasta	RAD18	chr3	8872075	8968472
RAD18_chr3_8872075_8968472	0/0	t0042	4370	1	1	0	0	0	0	copy fasta	RAD18	chr3	8872075	8968472
RAD18_chr3_8872075_8968472	0/0	t0043	4370	1	1	0	0	0	0	copy fasta	RAD18	chr3	8872075	8968472
RAD18_chr3_8872075_8968472	0/0	t0044	4370	1	0	0	1	0	0	copy fasta	RAD18	chr3	8872075	8968472
RAD18_chr3_8872075_8968472	0/0	t0045	4370	1	1	0	0	0	0	copy fasta	RAD18	chr3	8872075	8968472
RAD18_chr3_8872075_8968472	0/0	t0046	4370	1	0	0	0	1	0	copy fasta	RAD18	chr3	8872075	8968472
RAD18_chr3_8872075_8968472	0/0	t0047	4369	1	1	0	0	0	0	copy fasta	RAD18	chr3	8872075	8968472
RAD18_chr3_8872075_8968472	0/0	t0048	4370	1	1	0	0	0	0	copy fasta	RAD18	chr3	8872075	8968472
RAD18_chr3_8872075_8968472	0/0	t0049	4371	1	1	0	0	0	0	copy fasta	RAD18	chr3	8872075	8968472
RAD18_chr3_8872075_8968472	0/0	t0050	4370	1	0	1	0	0	0	copy fasta	RAD18	chr3	8872075	8968472
RAD1_chr5_34900260_34920504	0/1	t0001	3665	122	18	22	63	4	14	copy fasta	RAD1	chr5	34900260	34920504
RAD1_chr5_34900260_34920504	1/0	t0002	3664	104	20	8	72	0	3	copy fasta	RAD1	chr5	34900260	34920504
RAD1_chr5_34900260_34920504	0/0	t0003	3664	66	19	18	15	6	8	copy fasta	RAD1	chr5	34900260	34920504
RAD1_chr5_34900260_34920504	0/0	t0004	3664	61	4	23	19	6	9	copy fasta	RAD1	chr5	34900260	34920504
RAD1_chr5_34900260_34920504	0/0	t0005	3666	12	9	2	1	0	0	copy fasta	RAD1	chr5	34900260	34920504
RAD1_chr5_34900260_34920504	0/0	t0006	3667	10	0	4	0	1	5	copy fasta	RAD1	chr5	34900260	34920504
RAD1_chr5_34900260_34920504	0/0	t0007	3667	7	0	0	7	0	0	copy fasta	RAD1	chr5	34900260	34920504
RAD1_chr5_34900260_34920504	0/0	t0008	3666	5	5	0	0	0	0	copy fasta	RAD1	chr5	34900260	34920504
RAD1_chr5_34900260_34920504	0/0	t0009	3666	4	1	3	0	0	0	copy fasta	RAD1	chr5	34900260	34920504
RAD1_chr5_34900260_34920504	0/0	t0010	3666	4	4	0	0	0	0	copy fasta	RAD1	chr5	34900260	34920504
RAD1_chr5_34900260_34920504	0/0	t0011	3666	4	4	0	0	0	0	copy fasta	RAD1	chr5	34900260	34920504
RAD1_chr5_34900260_34920504	0/0	t0012	3664	3	3	0	0	0	0	copy fasta	RAD1	chr5	34900260	34920504
RAD1_chr5_34900260_34920504	0/0	t0013	3664	3	0	0	3	0	0	copy fasta	RAD1	chr5	34900260	34920504
RAD1_chr5_34900260_34920504	0/0	t0014	3665	3	1	0	2	0	0	copy fasta	RAD1	chr5	34900260	34920504
RAD1_chr5_34900260_34920504	0/0	t0015	3665	2	0	0	2	0	0	copy fasta	RAD1	chr5	34900260	34920504
RAD1_chr5_34900260_34920504	0/0	t0016	3665	2	0	0	2	0	0	copy fasta	RAD1	chr5	34900260	34920504
RAD1_chr5_34900260_34920504	0/0	t0017	3664	2	0	0	0	0	2	copy fasta	RAD1	chr5	34900260	34920504
RAD1_chr5_34900260_34920504	0/0	t0018	3666	1	1	0	0	0	0	copy fasta	RAD1	chr5	34900260	34920504
RAD1_chr5_34900260_34920504	0/0	t0019	3664	1	0	0	1	0	0	copy fasta	RAD1	chr5	34900260	34920504
RAD1_chr5_34900260_34920504	0/0	t0020	3667	1	1	0	0	0	0	copy fasta	RAD1	chr5	34900260	34920504
RAD1_chr5_34900260_34920504	0/0	t0021	3667	1	0	0	1	0	0	copy fasta	RAD1	chr5	34900260	34920504
RAD1_chr5_34900260_34920504	0/0	t0022	3666	1	0	0	1	0	0	copy fasta	RAD1	chr5	34900260	34920504
RAD1_chr5_34900260_34920504	0/0	t0023	3666	1	0	0	1	0	0	copy fasta	RAD1	chr5	34900260	34920504
RAD1_chr5_34900260_34920504	0/0	t0024	3665	1	0	0	0	0	1	copy fasta	RAD1	chr5	34900260	34920504