JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RAD1_chr5_34900260_34920504	0/0	t0025	3665	1	1	0	0	0	0	copy fasta	RAD1	chr5	34900260	34920504
RAD1_chr5_34900260_34920504	0/0	t0026	3664	1	0	0	1	0	0	copy fasta	RAD1	chr5	34900260	34920504
RAD1_chr5_34900260_34920504	0/0	t0027	3664	1	1	0	0	0	0	copy fasta	RAD1	chr5	34900260	34920504
RAD1_chr5_34900260_34920504	0/0	t0028	3664	1	0	0	0	0	1	copy fasta	RAD1	chr5	34900260	34920504
RAD1_chr5_34900260_34920504	0/0	t0029	3664	1	1	0	0	0	0	copy fasta	RAD1	chr5	34900260	34920504
RAD1_chr5_34900260_34920504	0/0	t0030	3664	1	0	0	1	0	0	copy fasta	RAD1	chr5	34900260	34920504
RAD1_chr5_34900260_34920504	0/0	t0031	3664	1	0	0	0	0	1	copy fasta	RAD1	chr5	34900260	34920504
RAD1_chr5_34900260_34920504	0/0	t0032	3664	1	0	0	0	1	0	copy fasta	RAD1	chr5	34900260	34920504
RAD1_chr5_34900260_34920504	0/0	t0033	3664	1	0	0	1	0	0	copy fasta	RAD1	chr5	34900260	34920504
RAD1_chr5_34900260_34920504	0/0	t0034	3664	1	0	0	1	0	0	copy fasta	RAD1	chr5	34900260	34920504
RAD1_chr5_34900260_34920504	0/0	t0035	3664	1	1	0	0	0	0	copy fasta	RAD1	chr5	34900260	34920504
RAD21L1_chr20_1221044_1260876	1/0	t0001	1549	157	10	31	90	7	18	copy fasta	RAD21L1	chr20	1221044	1260876
RAD21L1_chr20_1221044_1260876	0/1	t0002	1563	91	28	20	32	4	6	copy fasta	RAD21L1	chr20	1221044	1260876
RAD21L1_chr20_1221044_1260876	0/0	t0003	1562	60	22	10	19	3	6	copy fasta	RAD21L1	chr20	1221044	1260876
RAD21L1_chr20_1221044_1260876	0/0	t0004	1550	27	6	8	2	3	8	copy fasta	RAD21L1	chr20	1221044	1260876
RAD21L1_chr20_1221044_1260876	0/0	t0005	1558	10	10	0	0	0	0	copy fasta	RAD21L1	chr20	1221044	1260876
RAD21L1_chr20_1221044_1260876	0/0	t0006	1562	9	2	5	1	1	0	copy fasta	RAD21L1	chr20	1221044	1260876
RAD21L1_chr20_1221044_1260876	0/0	t0007	1562	3	3	0	0	0	0	copy fasta	RAD21L1	chr20	1221044	1260876
RAD21L1_chr20_1221044_1260876	0/0	t0008	1549	2	0	0	2	0	0	copy fasta	RAD21L1	chr20	1221044	1260876
RAD21L1_chr20_1221044_1260876	0/0	t0009	1549	1	0	0	1	0	0	copy fasta	RAD21L1	chr20	1221044	1260876
RAD21L1_chr20_1221044_1260876	0/0	t0010	1549	1	0	0	1	0	0	copy fasta	RAD21L1	chr20	1221044	1260876
RAD21L1_chr20_1221044_1260876	0/0	t0011	1558	1	1	0	0	0	0	copy fasta	RAD21L1	chr20	1221044	1260876
RAD21L1_chr20_1221044_1260876	0/0	t0012	1563	1	1	0	0	0	0	copy fasta	RAD21L1	chr20	1221044	1260876
RAD21L1_chr20_1221044_1260876	0/0	t0013	1563	1	1	0	0	0	0	copy fasta	RAD21L1	chr20	1221044	1260876
RAD21_chr8_116840934_116879776	0/1	t0001	1767	159	19	39	63	9	28	copy fasta	RAD21	chr8	116840934	116879776
RAD21_chr8_116840934_116879776	0/0	t0002	1765	97	15	11	63	0	8	copy fasta	RAD21	chr8	116840934	116879776
RAD21_chr8_116840934_116879776	1/0	t0003	1765	63	5	18	24	8	7	copy fasta	RAD21	chr8	116840934	116879776
RAD21_chr8_116840934_116879776	0/0	t0004	1768	42	0	0	41	0	1	copy fasta	RAD21	chr8	116840934	116879776
RAD21_chr8_116840934_116879776	0/0	t0005	1768	14	12	2	0	0	0	copy fasta	RAD21	chr8	116840934	116879776
RAD21_chr8_116840934_116879776	0/0	t0006	1767	11	10	1	0	0	0	copy fasta	RAD21	chr8	116840934	116879776
RAD21_chr8_116840934_116879776	0/0	t0007	1769	9	7	2	0	0	0	copy fasta	RAD21	chr8	116840934	116879776
RAD21_chr8_116840934_116879776	0/0	t0008	1768	8	5	0	0	1	2	copy fasta	RAD21	chr8	116840934	116879776
RAD21_chr8_116840934_116879776	0/0	t0009	1767	5	5	0	0	0	0	copy fasta	RAD21	chr8	116840934	116879776
RAD21_chr8_116840934_116879776	0/0	t0010	1768	4	4	0	0	0	0	copy fasta	RAD21	chr8	116840934	116879776
RAD21_chr8_116840934_116879776	0/0	t0011	1772	3	2	1	0	0	0	copy fasta	RAD21	chr8	116840934	116879776
RAD21_chr8_116840934_116879776	0/0	t0012	1767	3	3	0	0	0	0	copy fasta	RAD21	chr8	116840934	116879776
RAD21_chr8_116840934_116879776	0/0	t0013	1765	3	0	0	3	0	0	copy fasta	RAD21	chr8	116840934	116879776
RAD21_chr8_116840934_116879776	0/0	t0014	1767	2	2	0	0	0	0	copy fasta	RAD21	chr8	116840934	116879776
RAD21_chr8_116840934_116879776	0/0	t0015	1765	1	1	0	0	0	0	copy fasta	RAD21	chr8	116840934	116879776
RAD21_chr8_116840934_116879776	0/0	t0016	1765	1	0	0	1	0	0	copy fasta	RAD21	chr8	116840934	116879776
RAD21_chr8_116840934_116879776	0/0	t0017	1768	1	1	0	0	0	0	copy fasta	RAD21	chr8	116840934	116879776
RAD21_chr8_116840934_116879776	0/0	t0018	1767	1	0	0	1	0	0	copy fasta	RAD21	chr8	116840934	116879776
RAD21_chr8_116840934_116879776	0/0	t0019	1767	1	1	0	0	0	0	copy fasta	RAD21	chr8	116840934	116879776
RAD23A_chr19_12940862_12958642	1/1	t0001	681	302	69	62	124	9	36	copy fasta	RAD23A	chr19	12940862	12958642
RAD23A_chr19_12940862_12958642	0/0	t0002	681	32	13	6	10	3	0	copy fasta	RAD23A	chr19	12940862	12958642
RAD23A_chr19_12940862_12958642	0/0	t0003	681	9	0	6	0	3	0	copy fasta	RAD23A	chr19	12940862	12958642
RAD23A_chr19_12940862_12958642	0/0	t0004	681	7	5	2	0	0	0	copy fasta	RAD23A	chr19	12940862	12958642
RAD23A_chr19_12940862_12958642	0/0	t0005	681	5	5	0	0	0	0	copy fasta	RAD23A	chr19	12940862	12958642
RAD23A_chr19_12940862_12958642	0/0	t0006	681	2	0	0	0	0	2	copy fasta	RAD23A	chr19	12940862	12958642
RAD23A_chr19_12940862_12958642	0/0	t0007	681	1	0	1	0	0	0	copy fasta	RAD23A	chr19	12940862	12958642