JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RAD23A_chr19_12940862_12958642	0/0	t0008	681	1	0	0	1	0	0	copy fasta	RAD23A	chr19	12940862	12958642
RAD23A_chr19_12940862_12958642	0/0	t0009	681	1	0	0	0	1	0	copy fasta	RAD23A	chr19	12940862	12958642
RAD23A_chr19_12940862_12958642	0/0	t0010	681	1	0	0	1	0	0	copy fasta	RAD23A	chr19	12940862	12958642
RAD23A_chr19_12940862_12958642	0/0	t0011	681	1	0	0	1	0	0	copy fasta	RAD23A	chr19	12940862	12958642
RAD23A_chr19_12940862_12958642	0/0	t0012	681	1	0	1	0	0	0	copy fasta	RAD23A	chr19	12940862	12958642
RAD23A_chr19_12940862_12958642	0/0	t0013	681	1	0	0	1	0	0	copy fasta	RAD23A	chr19	12940862	12958642
RAD23B_chr9_107278279_107337189	0/0	t0001	2885	161	42	31	66	7	15	copy fasta	RAD23B	chr9	107278279	107337189
RAD23B_chr9_107278279_107337189	0/1	t0002	2886	55	3	13	27	1	10	copy fasta	RAD23B	chr9	107278279	107337189
RAD23B_chr9_107278279_107337189	1/0	t0003	2885	30	1	10	16	0	2	copy fasta	RAD23B	chr9	107278279	107337189
RAD23B_chr9_107278279_107337189	0/0	t0004	2885	20	0	6	3	4	7	copy fasta	RAD23B	chr9	107278279	107337189
RAD23B_chr9_107278279_107337189	0/0	t0005	2886	16	12	2	2	0	0	copy fasta	RAD23B	chr9	107278279	107337189
RAD23B_chr9_107278279_107337189	0/0	t0006	2885	12	11	1	0	0	0	copy fasta	RAD23B	chr9	107278279	107337189
RAD23B_chr9_107278279_107337189	0/0	t0007	2886	7	0	1	0	2	4	copy fasta	RAD23B	chr9	107278279	107337189
RAD23B_chr9_107278279_107337189	0/0	t0008	2885	6	5	0	0	0	1	copy fasta	RAD23B	chr9	107278279	107337189
RAD23B_chr9_107278279_107337189	0/0	t0009	2886	6	6	0	0	0	0	copy fasta	RAD23B	chr9	107278279	107337189
RAD23B_chr9_107278279_107337189	0/0	t0010	2881	5	0	0	5	0	0	copy fasta	RAD23B	chr9	107278279	107337189
RAD23B_chr9_107278279_107337189	0/0	t0011	2886	5	5	0	0	0	0	copy fasta	RAD23B	chr9	107278279	107337189
RAD23B_chr9_107278279_107337189	0/0	t0012	2886	4	3	1	0	0	0	copy fasta	RAD23B	chr9	107278279	107337189
RAD23B_chr9_107278279_107337189	0/0	t0013	2886	2	2	0	0	0	0	copy fasta	RAD23B	chr9	107278279	107337189
RAD23B_chr9_107278279_107337189	0/0	t0014	2886	1	1	0	0	0	0	copy fasta	RAD23B	chr9	107278279	107337189
RAD23B_chr9_107278279_107337189	0/0	t0015	2880	1	0	0	1	0	0	copy fasta	RAD23B	chr9	107278279	107337189
RAD23B_chr9_107278279_107337189	0/0	t0016	2885	1	0	0	1	0	0	copy fasta	RAD23B	chr9	107278279	107337189
RAD23B_chr9_107278279_107337189	0/0	t0017	2886	1	1	0	0	0	0	copy fasta	RAD23B	chr9	107278279	107337189
RAD23B_chr9_107278279_107337189	0/0	t0018	2887	1	1	0	0	0	0	copy fasta	RAD23B	chr9	107278279	107337189
RAD23B_chr9_107278279_107337189	0/0	t0019	2885	1	0	0	1	0	0	copy fasta	RAD23B	chr9	107278279	107337189
RAD23B_chr9_107278279_107337189	0/0	t0020	2884	1	0	0	1	0	0	copy fasta	RAD23B	chr9	107278279	107337189
RAD23B_chr9_107278279_107337189	0/0	t0021	2885	1	0	0	1	0	0	copy fasta	RAD23B	chr9	107278279	107337189
RAD23B_chr9_107278279_107337189	0/0	t0022	2885	1	0	0	0	0	1	copy fasta	RAD23B	chr9	107278279	107337189
RAD23B_chr9_107278279_107337189	0/0	t0023	2887	1	0	1	0	0	0	copy fasta	RAD23B	chr9	107278279	107337189
RAD23B_chr9_107278279_107337189	0/0	t0024	2885	1	1	0	0	0	0	copy fasta	RAD23B	chr9	107278279	107337189
RAD23B_chr9_107278279_107337189	0/0	t0025	2886	1	1	0	0	0	0	copy fasta	RAD23B	chr9	107278279	107337189
RAD23B_chr9_107278279_107337189	0/0	t0026	2885	1	1	0	0	0	0	copy fasta	RAD23B	chr9	107278279	107337189
RAD23B_chr9_107278279_107337189	0/0	t0027	2885	1	1	0	0	0	0	copy fasta	RAD23B	chr9	107278279	107337189
RAD23B_chr9_107278279_107337189	0/0	t0028	2885	1	1	0	0	0	0	copy fasta	RAD23B	chr9	107278279	107337189
RAD23B_chr9_107278279_107337189	0/0	t0029	2887	1	0	1	0	0	0	copy fasta	RAD23B	chr9	107278279	107337189
RAD23B_chr9_107278279_107337189	0/0	t0030	2886	1	0	1	0	0	0	copy fasta	RAD23B	chr9	107278279	107337189
RAD50_chr5_132551977_132651349	0/0	t0001	4335	51	6	10	29	2	4	copy fasta	RAD50	chr5	132551977	132651349
RAD50_chr5_132551977_132651349	0/1	t0002	4334	39	6	10	15	2	5	copy fasta	RAD50	chr5	132551977	132651349
RAD50_chr5_132551977_132651349	0/0	t0003	4340	36	3	7	19	3	4	copy fasta	RAD50	chr5	132551977	132651349
RAD50_chr5_132551977_132651349	0/0	t0004	4334	15	8	2	4	1	0	copy fasta	RAD50	chr5	132551977	132651349
RAD50_chr5_132551977_132651349	0/0	t0005	4332	14	0	1	12	0	1	copy fasta	RAD50	chr5	132551977	132651349
RAD50_chr5_132551977_132651349	0/0	t0006	4337	11	10	1	0	0	0	copy fasta	RAD50	chr5	132551977	132651349
RAD50_chr5_132551977_132651349	0/0	t0007	4339	9	6	0	3	0	0	copy fasta	RAD50	chr5	132551977	132651349
RAD50_chr5_132551977_132651349	0/0	t0008	4341	7	1	0	5	0	1	copy fasta	RAD50	chr5	132551977	132651349
RAD50_chr5_132551977_132651349	0/0	t0009	4326	7	7	0	0	0	0	copy fasta	RAD50	chr5	132551977	132651349
RAD50_chr5_132551977_132651349	0/0	t0010	4343	6	6	0	0	0	0	copy fasta	RAD50	chr5	132551977	132651349
RAD50_chr5_132551977_132651349	0/0	t0011	4336	5	1	1	1	0	2	copy fasta	RAD50	chr5	132551977	132651349
RAD50_chr5_132551977_132651349	0/0	t0012	4333	5	0	0	5	0	0	copy fasta	RAD50	chr5	132551977	132651349
RAD50_chr5_132551977_132651349	0/0	t0013	4339	5	5	0	0	0	0	copy fasta	RAD50	chr5	132551977	132651349
RAD50_chr5_132551977_132651349	0/0	t0014	4335	4	0	1	0	0	3	copy fasta	RAD50	chr5	132551977	132651349