JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RAD50_chr5_132551977_132651349	0/0	t0015	4342	3	0	0	2	0	1	copy fasta	RAD50	chr5	132551977	132651349
RAD50_chr5_132551977_132651349	0/0	t0016	4341	3	0	0	3	0	0	copy fasta	RAD50	chr5	132551977	132651349
RAD50_chr5_132551977_132651349	0/0	t0017	4335	3	0	0	1	0	2	copy fasta	RAD50	chr5	132551977	132651349
RAD50_chr5_132551977_132651349	0/0	t0018	4335	3	3	0	0	0	0	copy fasta	RAD50	chr5	132551977	132651349
RAD50_chr5_132551977_132651349	0/0	t0019	4340	3	0	0	3	0	0	copy fasta	RAD50	chr5	132551977	132651349
RAD50_chr5_132551977_132651349	0/0	t0020	4338	3	3	0	0	0	0	copy fasta	RAD50	chr5	132551977	132651349
RAD50_chr5_132551977_132651349	0/0	t0021	4344	3	2	1	0	0	0	copy fasta	RAD50	chr5	132551977	132651349
RAD50_chr5_132551977_132651349	0/0	t0022	4340	2	0	0	2	0	0	copy fasta	RAD50	chr5	132551977	132651349
RAD50_chr5_132551977_132651349	0/0	t0023	4337	2	1	1	0	0	0	copy fasta	RAD50	chr5	132551977	132651349
RAD50_chr5_132551977_132651349	0/0	t0024	4340	2	0	0	0	0	2	copy fasta	RAD50	chr5	132551977	132651349
RAD50_chr5_132551977_132651349	0/0	t0025	4336	2	0	2	0	0	0	copy fasta	RAD50	chr5	132551977	132651349
RAD50_chr5_132551977_132651349	0/0	t0026	4343	2	2	0	0	0	0	copy fasta	RAD50	chr5	132551977	132651349
RAD50_chr5_132551977_132651349	0/0	t0027	4342	2	1	1	0	0	0	copy fasta	RAD50	chr5	132551977	132651349
RAD50_chr5_132551977_132651349	0/0	t0028	4325	2	0	2	0	0	0	copy fasta	RAD50	chr5	132551977	132651349
RAD50_chr5_132551977_132651349	0/0	t0029	4335	1	1	0	0	0	0	copy fasta	RAD50	chr5	132551977	132651349
RAD50_chr5_132551977_132651349	0/0	t0030	4334	1	1	0	0	0	0	copy fasta	RAD50	chr5	132551977	132651349
RAD50_chr5_132551977_132651349	0/0	t0031	4334	1	0	1	0	0	0	copy fasta	RAD50	chr5	132551977	132651349
RAD50_chr5_132551977_132651349	0/0	t0032	4340	1	0	0	1	0	0	copy fasta	RAD50	chr5	132551977	132651349
RAD50_chr5_132551977_132651349	0/0	t0033	4339	1	0	0	0	0	1	copy fasta	RAD50	chr5	132551977	132651349
RAD50_chr5_132551977_132651349	0/0	t0034	4336	1	1	0	0	0	0	copy fasta	RAD50	chr5	132551977	132651349
RAD50_chr5_132551977_132651349	0/0	t0035	4341	1	0	0	0	0	1	copy fasta	RAD50	chr5	132551977	132651349
RAD50_chr5_132551977_132651349	0/0	t0036	4334	1	0	0	0	0	1	copy fasta	RAD50	chr5	132551977	132651349
RAD50_chr5_132551977_132651349	0/0	t0037	4335	1	0	0	1	0	0	copy fasta	RAD50	chr5	132551977	132651349
RAD50_chr5_132551977_132651349	0/0	t0038	4336	1	0	0	1	0	0	copy fasta	RAD50	chr5	132551977	132651349
RAD50_chr5_132551977_132651349	0/0	t0039	4334	1	1	0	0	0	0	copy fasta	RAD50	chr5	132551977	132651349
RAD50_chr5_132551977_132651349	0/0	t0040	4341	1	1	0	0	0	0	copy fasta	RAD50	chr5	132551977	132651349
RAD50_chr5_132551977_132651349	0/0	t0041	4335	1	1	0	0	0	0	copy fasta	RAD50	chr5	132551977	132651349
RAD50_chr5_132551977_132651349	0/0	t0042	4337	1	1	0	0	0	0	copy fasta	RAD50	chr5	132551977	132651349
RAD50_chr5_132551977_132651349	0/0	t0043	4334	1	1	0	0	0	0	copy fasta	RAD50	chr5	132551977	132651349
RAD50_chr5_132551977_132651349	0/0	t0044	4345	1	1	0	0	0	0	copy fasta	RAD50	chr5	132551977	132651349
RAD50_chr5_132551977_132651349	0/0	t0045	4335	1	1	0	0	0	0	copy fasta	RAD50	chr5	132551977	132651349
RAD50_chr5_132551977_132651349	0/0	t0046	4350	1	1	0	0	0	0	copy fasta	RAD50	chr5	132551977	132651349
RAD50_chr5_132551977_132651349	0/0	t0047	4345	1	1	0	0	0	0	copy fasta	RAD50	chr5	132551977	132651349
RAD50_chr5_132551977_132651349	0/0	t0048	4335	1	1	0	0	0	0	copy fasta	RAD50	chr5	132551977	132651349
RAD50_chr5_132551977_132651349	0/0	t0049	4343	1	1	0	0	0	0	copy fasta	RAD50	chr5	132551977	132651349
RAD50_chr5_132551977_132651349	1/0	t0050	4334	1	0	0	0	0	0	copy fasta	RAD50	chr5	132551977	132651349
RAD50_chr5_132551977_132651349	0/0	t0051	4340	1	1	0	0	0	0	copy fasta	RAD50	chr5	132551977	132651349
RAD50_chr5_132551977_132651349	0/0	t0052	4335	1	1	0	0	0	0	copy fasta	RAD50	chr5	132551977	132651349
RAD50_chr5_132551977_132651349	0/0	t0053	4336	1	0	1	0	0	0	copy fasta	RAD50	chr5	132551977	132651349
RAD50_chr5_132551977_132651349	0/0	t0054	4349	1	1	0	0	0	0	copy fasta	RAD50	chr5	132551977	132651349
RAD50_chr5_132551977_132651349	0/0	t0055	4335	1	0	0	1	0	0	copy fasta	RAD50	chr5	132551977	132651349
RAD51AP1_chr12_4533890_4565047	0/1	t0001	1105	262	64	65	82	8	42	copy fasta	RAD51AP1	chr12	4533890	4565047
RAD51AP1_chr12_4533890_4565047	0/0	t0002	1105	14	13	1	0	0	0	copy fasta	RAD51AP1	chr12	4533890	4565047
RAD51AP1_chr12_4533890_4565047	0/0	t0003	1105	6	6	0	0	0	0	copy fasta	RAD51AP1	chr12	4533890	4565047
RAD51AP1_chr12_4533890_4565047	0/0	t0004	1105	4	4	0	0	0	0	copy fasta	RAD51AP1	chr12	4533890	4565047
RAD51AP1_chr12_4533890_4565047	0/0	t0005	1105	2	0	0	2	0	0	copy fasta	RAD51AP1	chr12	4533890	4565047
RAD51AP1_chr12_4533890_4565047	0/0	t0006	1105	2	0	0	2	0	0	copy fasta	RAD51AP1	chr12	4533890	4565047
RAD51AP1_chr12_4533890_4565047	0/0	t0007	1105	1	1	0	0	0	0	copy fasta	RAD51AP1	chr12	4533890	4565047
RAD51AP1_chr12_4533890_4565047	1/0	t0008	1105	1	0	0	0	0	0	copy fasta	RAD51AP1	chr12	4533890	4565047
RAD51AP2_chr2_17505579_17523440	0/0	t0001	250	203	9	34	118	12	30	copy fasta	RAD51AP2	chr2	17505579	17523440