Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ATXN7L3B_chr12_74532835_74550430	0/0	t0036	7298	1	0	1	0	0	0	copy fasta	ATXN7L3B	chr12	74532835	74550430
ATXN7L3B_chr12_74532835_74550430	0/0	t0037	7298	1	1	0	0	0	0	copy fasta	ATXN7L3B	chr12	74532835	74550430
ATXN7L3B_chr12_74532835_74550430	0/0	t0038	7299	1	1	0	0	0	0	copy fasta	ATXN7L3B	chr12	74532835	74550430
ATXN7L3B_chr12_74532835_74550430	0/0	t0039	7299	1	1	0	0	0	0	copy fasta	ATXN7L3B	chr12	74532835	74550430
ATXN7L3B_chr12_74532835_74550430	0/0	t0040	7300	1	1	0	0	0	0	copy fasta	ATXN7L3B	chr12	74532835	74550430
ATXN7L3B_chr12_74532835_74550430	0/0	t0041	7299	1	1	0	0	0	0	copy fasta	ATXN7L3B	chr12	74532835	74550430
ATXN7L3B_chr12_74532835_74550430	0/0	t0042	7298	1	1	0	0	0	0	copy fasta	ATXN7L3B	chr12	74532835	74550430
ATXN7L3B_chr12_74532835_74550430	0/0	t0043	7300	1	1	0	0	0	0	copy fasta	ATXN7L3B	chr12	74532835	74550430
ATXN7L3B_chr12_74532835_74550430	0/0	t0044	7297	1	1	0	0	0	0	copy fasta	ATXN7L3B	chr12	74532835	74550430
ATXN7L3B_chr12_74532835_74550430	0/0	t0045	7298	1	1	0	0	0	0	copy fasta	ATXN7L3B	chr12	74532835	74550430
ATXN7L3B_chr12_74532835_74550430	0/0	t0046	7302	1	1	0	0	0	0	copy fasta	ATXN7L3B	chr12	74532835	74550430
ATXN7L3B_chr12_74532835_74550430	0/0	t0047	7298	1	1	0	0	0	0	copy fasta	ATXN7L3B	chr12	74532835	74550430
ATXN7L3B_chr12_74532835_74550430	0/0	t0048	7300	1	0	0	1	0	0	copy fasta	ATXN7L3B	chr12	74532835	74550430
ATXN7L3B_chr12_74532835_74550430	0/0	t0049	7299	1	0	1	0	0	0	copy fasta	ATXN7L3B	chr12	74532835	74550430
ATXN7L3B_chr12_74532835_74550430	0/0	t0050	7298	1	0	0	0	0	1	copy fasta	ATXN7L3B	chr12	74532835	74550430
ATXN7L3B_chr12_74532835_74550430	0/0	t0051	7301	1	1	0	0	0	0	copy fasta	ATXN7L3B	chr12	74532835	74550430
ATXN7L3B_chr12_74532835_74550430	0/0	t0052	7301	1	0	0	0	1	0	copy fasta	ATXN7L3B	chr12	74532835	74550430
ATXN7L3B_chr12_74532835_74550430	0/0	t0053	7301	1	0	0	0	1	0	copy fasta	ATXN7L3B	chr12	74532835	74550430
ATXN7L3B_chr12_74532835_74550430	0/0	t0054	7301	1	0	0	0	0	1	copy fasta	ATXN7L3B	chr12	74532835	74550430
ATXN7L3B_chr12_74532835_74550430	0/0	t0055	7301	1	0	0	1	0	0	copy fasta	ATXN7L3B	chr12	74532835	74550430
ATXN7L3B_chr12_74532835_74550430	0/0	t0056	7300	1	0	1	0	0	0	copy fasta	ATXN7L3B	chr12	74532835	74550430
ATXN7L3B_chr12_74532835_74550430	0/0	t0057	7293	1	0	0	1	0	0	copy fasta	ATXN7L3B	chr12	74532835	74550430
ATXN7L3B_chr12_74532835_74550430	0/0	t0058	7300	1	0	0	0	0	1	copy fasta	ATXN7L3B	chr12	74532835	74550430
ATXN7L3B_chr12_74532835_74550430	0/0	t0059	7301	1	1	0	0	0	0	copy fasta	ATXN7L3B	chr12	74532835	74550430
ATXN7L3B_chr12_74532835_74550430	0/0	t0060	7300	1	0	0	1	0	0	copy fasta	ATXN7L3B	chr12	74532835	74550430
ATXN7L3B_chr12_74532835_74550430	0/0	t0061	7300	1	0	0	1	0	0	copy fasta	ATXN7L3B	chr12	74532835	74550430
ATXN7L3B_chr12_74532835_74550430	0/0	t0062	7300	1	0	1	0	0	0	copy fasta	ATXN7L3B	chr12	74532835	74550430
ATXN7L3B_chr12_74532835_74550430	0/0	t0063	7300	1	0	0	0	0	1	copy fasta	ATXN7L3B	chr12	74532835	74550430
ATXN7L3B_chr12_74532835_74550430	0/0	t0064	7300	1	0	0	0	0	1	copy fasta	ATXN7L3B	chr12	74532835	74550430
ATXN7L3B_chr12_74532835_74550430	0/0	t0065	7299	1	0	0	1	0	0	copy fasta	ATXN7L3B	chr12	74532835	74550430
ATXN7L3B_chr12_74532835_74550430	0/0	t0066	7292	1	0	0	0	0	1	copy fasta	ATXN7L3B	chr12	74532835	74550430
ATXN7L3B_chr12_74532835_74550430	0/0	t0067	7294	1	1	0	0	0	0	copy fasta	ATXN7L3B	chr12	74532835	74550430
ATXN7L3B_chr12_74532835_74550430	1/0	t0068	7303	1	0	0	0	0	0	copy fasta	ATXN7L3B	chr12	74532835	74550430
ATXN7L3B_chr12_74532835_74550430	0/0	t0069	7301	1	0	1	0	0	0	copy fasta	ATXN7L3B	chr12	74532835	74550430
ATXN7L3B_chr12_74532835_74550430	0/0	t0070	7298	1	1	0	0	0	0	copy fasta	ATXN7L3B	chr12	74532835	74550430
ATXN7L3B_chr12_74532835_74550430	0/0	t0071	7292	1	0	0	1	0	0	copy fasta	ATXN7L3B	chr12	74532835	74550430
ATXN7L3B_chr12_74532835_74550430	0/0	t0072	7292	1	0	0	1	0	0	copy fasta	ATXN7L3B	chr12	74532835	74550430
ATXN7L3B_chr12_74532835_74550430	0/0	t0073	7292	1	0	0	1	0	0	copy fasta	ATXN7L3B	chr12	74532835	74550430
ATXN7L3B_chr12_74532835_74550430	0/0	t0074	7292	1	0	0	1	0	0	copy fasta	ATXN7L3B	chr12	74532835	74550430
ATXN7L3B_chr12_74532835_74550430	0/0	t0075	7292	1	0	0	1	0	0	copy fasta	ATXN7L3B	chr12	74532835	74550430
ATXN7L3B_chr12_74532835_74550430	0/0	t0076	7299	1	0	0	1	0	0	copy fasta	ATXN7L3B	chr12	74532835	74550430
ATXN7L3B_chr12_74532835_74550430	0/0	t0077	7290	1	1	0	0	0	0	copy fasta	ATXN7L3B	chr12	74532835	74550430
ATXN7L3B_chr12_74532835_74550430	0/0	t0078	7290	1	1	0	0	0	0	copy fasta	ATXN7L3B	chr12	74532835	74550430
ATXN7L3B_chr12_74532835_74550430	0/0	t0079	7292	1	0	0	1	0	0	copy fasta	ATXN7L3B	chr12	74532835	74550430
ATXN7L3B_chr12_74532835_74550430	0/0	t0080	7294	1	1	0	0	0	0	copy fasta	ATXN7L3B	chr12	74532835	74550430
ATXN7L3_chr17_44186805_44204884	0/0	t0001	2909	180	56	27	88	3	6	copy fasta	ATXN7L3	chr17	44186805	44204884
ATXN7L3_chr17_44186805_44204884	0/1	t0002	2909	101	1	24	45	8	22	copy fasta	ATXN7L3	chr17	44186805	44204884
ATXN7L3_chr17_44186805_44204884	0/0	t0003	2909	28	7	3	16	1	1	copy fasta	ATXN7L3	chr17	44186805	44204884
ATXN7L3_chr17_44186805_44204884	1/0	t0004	2908	18	0	5	8	1	3	copy fasta	ATXN7L3	chr17	44186805	44204884
ATXN7L3_chr17_44186805_44204884	0/0	t0005	2909	9	8	1	0	0	0	copy fasta	ATXN7L3	chr17	44186805	44204884