JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RAD51_chr15_40690174_40737340	0/0	t0007	1417	8	6	1	0	1	0	copy fasta	RAD51	chr15	40690174	40737340
RAD51_chr15_40690174_40737340	0/0	t0008	1417	7	0	0	7	0	0	copy fasta	RAD51	chr15	40690174	40737340
RAD51_chr15_40690174_40737340	0/0	t0009	1417	7	7	0	0	0	0	copy fasta	RAD51	chr15	40690174	40737340
RAD51_chr15_40690174_40737340	0/0	t0010	1417	3	3	0	0	0	0	copy fasta	RAD51	chr15	40690174	40737340
RAD51_chr15_40690174_40737340	0/0	t0011	1417	3	3	0	0	0	0	copy fasta	RAD51	chr15	40690174	40737340
RAD51_chr15_40690174_40737340	0/0	t0012	1417	2	0	0	2	0	0	copy fasta	RAD51	chr15	40690174	40737340
RAD51_chr15_40690174_40737340	0/0	t0013	1417	2	0	0	2	0	0	copy fasta	RAD51	chr15	40690174	40737340
RAD51_chr15_40690174_40737340	0/0	t0014	1417	2	2	0	0	0	0	copy fasta	RAD51	chr15	40690174	40737340
RAD51_chr15_40690174_40737340	0/0	t0015	1417	2	0	0	0	0	2	copy fasta	RAD51	chr15	40690174	40737340
RAD51_chr15_40690174_40737340	0/0	t0016	1417	1	1	0	0	0	0	copy fasta	RAD51	chr15	40690174	40737340
RAD51_chr15_40690174_40737340	0/0	t0017	1417	1	0	0	0	0	1	copy fasta	RAD51	chr15	40690174	40737340
RAD51_chr15_40690174_40737340	0/0	t0018	1417	1	0	0	1	0	0	copy fasta	RAD51	chr15	40690174	40737340
RAD51_chr15_40690174_40737340	0/0	t0019	1417	1	1	0	0	0	0	copy fasta	RAD51	chr15	40690174	40737340
RAD51_chr15_40690174_40737340	0/0	t0020	1417	1	1	0	0	0	0	copy fasta	RAD51	chr15	40690174	40737340
RAD52_chr12_906736_954694	0/0	t0001	1766	59	15	11	25	3	5	copy fasta	RAD52	chr12	906736	954694
RAD52_chr12_906736_954694	0/0	t0002	1762	46	1	9	28	1	7	copy fasta	RAD52	chr12	906736	954694
RAD52_chr12_906736_954694	0/0	t0003	1781	33	4	6	20	1	2	copy fasta	RAD52	chr12	906736	954694
RAD52_chr12_906736_954694	0/0	t0004	1768	30	3	6	14	2	5	copy fasta	RAD52	chr12	906736	954694
RAD52_chr12_906736_954694	0/0	t0005	1780	30	0	8	17	0	5	copy fasta	RAD52	chr12	906736	954694
RAD52_chr12_906736_954694	0/0	t0006	1779	22	6	8	7	1	0	copy fasta	RAD52	chr12	906736	954694
RAD52_chr12_906736_954694	0/1	t0007	1782	18	1	1	14	0	1	copy fasta	RAD52	chr12	906736	954694
RAD52_chr12_906736_954694	0/0	t0008	1762	13	10	3	0	0	0	copy fasta	RAD52	chr12	906736	954694
RAD52_chr12_906736_954694	0/0	t0009	1767	12	2	5	4	0	1	copy fasta	RAD52	chr12	906736	954694
RAD52_chr12_906736_954694	0/0	t0010	1765	12	7	3	0	0	2	copy fasta	RAD52	chr12	906736	954694
RAD52_chr12_906736_954694	0/0	t0011	1778	11	4	2	5	0	0	copy fasta	RAD52	chr12	906736	954694
RAD52_chr12_906736_954694	0/0	t0012	1783	7	1	0	6	0	0	copy fasta	RAD52	chr12	906736	954694
RAD52_chr12_906736_954694	0/0	t0013	1768	6	0	0	6	0	0	copy fasta	RAD52	chr12	906736	954694
RAD52_chr12_906736_954694	0/0	t0014	1775	6	5	0	1	0	0	copy fasta	RAD52	chr12	906736	954694
RAD52_chr12_906736_954694	0/0	t0015	1775	6	0	4	2	0	0	copy fasta	RAD52	chr12	906736	954694
RAD52_chr12_906736_954694	0/0	t0016	1767	5	5	0	0	0	0	copy fasta	RAD52	chr12	906736	954694
RAD52_chr12_906736_954694	0/0	t0017	1767	5	4	0	0	0	1	copy fasta	RAD52	chr12	906736	954694
RAD52_chr12_906736_954694	0/0	t0018	1763	5	4	1	0	0	0	copy fasta	RAD52	chr12	906736	954694
RAD52_chr12_906736_954694	0/0	t0019	1761	5	4	1	0	0	0	copy fasta	RAD52	chr12	906736	954694
RAD52_chr12_906736_954694	1/0	t0020	1767	5	4	0	0	0	0	copy fasta	RAD52	chr12	906736	954694
RAD52_chr12_906736_954694	0/0	t0021	1765	4	0	0	3	0	1	copy fasta	RAD52	chr12	906736	954694
RAD52_chr12_906736_954694	0/0	t0022	1776	4	0	1	3	0	0	copy fasta	RAD52	chr12	906736	954694
RAD52_chr12_906736_954694	0/0	t0023	1765	3	2	0	0	0	1	copy fasta	RAD52	chr12	906736	954694
RAD52_chr12_906736_954694	0/0	t0024	1784	3	0	0	3	0	0	copy fasta	RAD52	chr12	906736	954694
RAD52_chr12_906736_954694	0/0	t0025	1767	3	0	0	1	1	1	copy fasta	RAD52	chr12	906736	954694
RAD52_chr12_906736_954694	0/0	t0026	1762	2	0	0	0	2	0	copy fasta	RAD52	chr12	906736	954694
RAD52_chr12_906736_954694	0/0	t0027	1765	2	0	0	2	0	0	copy fasta	RAD52	chr12	906736	954694
RAD52_chr12_906736_954694	0/0	t0028	1766	2	0	0	1	0	1	copy fasta	RAD52	chr12	906736	954694
RAD52_chr12_906736_954694	0/0	t0029	1769	2	0	0	2	0	0	copy fasta	RAD52	chr12	906736	954694
RAD52_chr12_906736_954694	0/0	t0030	1783	2	0	0	2	0	0	copy fasta	RAD52	chr12	906736	954694
RAD52_chr12_906736_954694	0/0	t0031	1785	2	0	0	2	0	0	copy fasta	RAD52	chr12	906736	954694
RAD52_chr12_906736_954694	0/0	t0032	1766	2	0	0	0	0	2	copy fasta	RAD52	chr12	906736	954694
RAD52_chr12_906736_954694	0/0	t0033	1766	2	1	1	0	0	0	copy fasta	RAD52	chr12	906736	954694
RAD52_chr12_906736_954694	0/0	t0034	1766	1	1	0	0	0	0	copy fasta	RAD52	chr12	906736	954694
RAD52_chr12_906736_954694	0/0	t0035	1765	1	0	1	0	0	0	copy fasta	RAD52	chr12	906736	954694
RAD52_chr12_906736_954694	0/0	t0036	1766	1	0	1	0	0	0	copy fasta	RAD52	chr12	906736	954694