JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RAD52_chr12_906736_954694	0/0	t0037	1766	1	1	0	0	0	0	copy fasta	RAD52	chr12	906736	954694
RAD52_chr12_906736_954694	0/0	t0038	1765	1	0	0	1	0	0	copy fasta	RAD52	chr12	906736	954694
RAD52_chr12_906736_954694	0/0	t0039	1767	1	1	0	0	0	0	copy fasta	RAD52	chr12	906736	954694
RAD52_chr12_906736_954694	0/0	t0040	1766	1	1	0	0	0	0	copy fasta	RAD52	chr12	906736	954694
RAD52_chr12_906736_954694	0/0	t0041	1768	1	0	1	0	0	0	copy fasta	RAD52	chr12	906736	954694
RAD52_chr12_906736_954694	0/0	t0042	1769	1	0	0	1	0	0	copy fasta	RAD52	chr12	906736	954694
RAD52_chr12_906736_954694	0/0	t0043	1766	1	1	0	0	0	0	copy fasta	RAD52	chr12	906736	954694
RAD52_chr12_906736_954694	0/0	t0044	1769	1	0	0	1	0	0	copy fasta	RAD52	chr12	906736	954694
RAD52_chr12_906736_954694	0/0	t0045	1770	1	0	0	0	0	1	copy fasta	RAD52	chr12	906736	954694
RAD52_chr12_906736_954694	0/0	t0046	1780	1	0	1	0	0	0	copy fasta	RAD52	chr12	906736	954694
RAD52_chr12_906736_954694	0/0	t0047	1783	1	0	1	0	0	0	copy fasta	RAD52	chr12	906736	954694
RAD52_chr12_906736_954694	0/0	t0048	1781	1	0	0	0	1	0	copy fasta	RAD52	chr12	906736	954694
RAD52_chr12_906736_954694	0/0	t0049	1777	1	0	0	0	0	1	copy fasta	RAD52	chr12	906736	954694
RAD52_chr12_906736_954694	0/0	t0050	1781	1	0	0	0	0	1	copy fasta	RAD52	chr12	906736	954694
RAD52_chr12_906736_954694	0/0	t0051	1786	1	0	0	1	0	0	copy fasta	RAD52	chr12	906736	954694
RAD52_chr12_906736_954694	0/0	t0052	1783	1	0	0	1	0	0	copy fasta	RAD52	chr12	906736	954694
RAD52_chr12_906736_954694	0/0	t0053	1785	1	0	0	1	0	0	copy fasta	RAD52	chr12	906736	954694
RAD52_chr12_906736_954694	0/0	t0054	1775	1	0	0	0	0	1	copy fasta	RAD52	chr12	906736	954694
RAD52_chr12_906736_954694	0/0	t0055	1762	1	1	0	0	0	0	copy fasta	RAD52	chr12	906736	954694
RAD52_chr12_906736_954694	0/0	t0056	1767	1	0	0	0	0	1	copy fasta	RAD52	chr12	906736	954694
RAD52_chr12_906736_954694	0/0	t0057	1762	1	0	0	1	0	0	copy fasta	RAD52	chr12	906736	954694
RAD52_chr12_906736_954694	0/0	t0058	1763	1	1	0	0	0	0	copy fasta	RAD52	chr12	906736	954694
RAD52_chr12_906736_954694	0/0	t0059	1762	1	0	0	1	0	0	copy fasta	RAD52	chr12	906736	954694
RAD52_chr12_906736_954694	0/0	t0060	1767	1	0	0	1	0	0	copy fasta	RAD52	chr12	906736	954694
RAD52_chr12_906736_954694	0/0	t0061	1767	1	0	0	1	0	0	copy fasta	RAD52	chr12	906736	954694
RAD52_chr12_906736_954694	0/0	t0062	1768	1	1	0	0	0	0	copy fasta	RAD52	chr12	906736	954694
RAD52_chr12_906736_954694	0/0	t0063	1778	1	0	1	0	0	0	copy fasta	RAD52	chr12	906736	954694
RAD52_chr12_906736_954694	0/0	t0064	1764	1	1	0	0	0	0	copy fasta	RAD52	chr12	906736	954694
RAD54B_chr8_94366960_94480115	1/1	t0001	342	344	87	60	156	10	29	copy fasta	RAD54B	chr8	94366960	94480115
RAD54B_chr8_94366960_94480115	0/0	t0002	342	10	1	3	0	4	2	copy fasta	RAD54B	chr8	94366960	94480115
RAD54B_chr8_94366960_94480115	0/0	t0003	342	4	0	0	3	0	1	copy fasta	RAD54B	chr8	94366960	94480115
RAD54B_chr8_94366960_94480115	0/0	t0004	342	3	2	1	0	0	0	copy fasta	RAD54B	chr8	94366960	94480115
RAD54B_chr8_94366960_94480115	0/0	t0005	342	1	0	0	1	0	0	copy fasta	RAD54B	chr8	94366960	94480115
RAD54L2_chr3_51533719_51673660	0/0	t0001	5550	26	1	1	23	1	0	copy fasta	RAD54L2	chr3	51533719	51673660
RAD54L2_chr3_51533719_51673660	0/0	t0002	5555	26	6	6	13	0	1	copy fasta	RAD54L2	chr3	51533719	51673660
RAD54L2_chr3_51533719_51673660	0/0	t0003	5538	21	0	4	15	0	2	copy fasta	RAD54L2	chr3	51533719	51673660
RAD54L2_chr3_51533719_51673660	0/0	t0004	5551	20	0	3	16	0	1	copy fasta	RAD54L2	chr3	51533719	51673660
RAD54L2_chr3_51533719_51673660	0/0	t0005	5554	20	3	5	9	1	2	copy fasta	RAD54L2	chr3	51533719	51673660
RAD54L2_chr3_51533719_51673660	0/0	t0006	5554	13	0	5	8	0	0	copy fasta	RAD54L2	chr3	51533719	51673660
RAD54L2_chr3_51533719_51673660	0/0	t0007	5553	13	4	4	2	1	2	copy fasta	RAD54L2	chr3	51533719	51673660
RAD54L2_chr3_51533719_51673660	0/0	t0008	5550	12	0	10	2	0	0	copy fasta	RAD54L2	chr3	51533719	51673660
RAD54L2_chr3_51533719_51673660	0/0	t0009	5556	11	6	1	4	0	0	copy fasta	RAD54L2	chr3	51533719	51673660
RAD54L2_chr3_51533719_51673660	0/0	t0010	5555	9	2	2	3	1	1	copy fasta	RAD54L2	chr3	51533719	51673660
RAD54L2_chr3_51533719_51673660	0/0	t0011	5549	6	0	0	5	1	0	copy fasta	RAD54L2	chr3	51533719	51673660
RAD54L2_chr3_51533719_51673660	0/0	t0012	5550	5	5	0	0	0	0	copy fasta	RAD54L2	chr3	51533719	51673660
RAD54L2_chr3_51533719_51673660	0/0	t0013	5552	5	0	1	4	0	0	copy fasta	RAD54L2	chr3	51533719	51673660
RAD54L2_chr3_51533719_51673660	0/0	t0014	5557	5	0	3	2	0	0	copy fasta	RAD54L2	chr3	51533719	51673660
RAD54L2_chr3_51533719_51673660	0/0	t0015	5539	5	0	2	1	0	2	copy fasta	RAD54L2	chr3	51533719	51673660
RAD54L2_chr3_51533719_51673660	0/0	t0016	5556	4	0	1	3	0	0	copy fasta	RAD54L2	chr3	51533719	51673660
RAD54L2_chr3_51533719_51673660	0/0	t0017	5538	4	0	0	4	0	0	copy fasta	RAD54L2	chr3	51533719	51673660