JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RAD54L2_chr3_51533719_51673660	0/0	t0018	5553	4	2	2	0	0	0	copy fasta	RAD54L2	chr3	51533719	51673660
RAD54L2_chr3_51533719_51673660	1/0	t0019	5554	3	0	1	0	1	0	copy fasta	RAD54L2	chr3	51533719	51673660
RAD54L2_chr3_51533719_51673660	0/1	t0020	5555	3	0	1	0	0	1	copy fasta	RAD54L2	chr3	51533719	51673660
RAD54L2_chr3_51533719_51673660	0/0	t0021	5537	3	0	1	1	1	0	copy fasta	RAD54L2	chr3	51533719	51673660
RAD54L2_chr3_51533719_51673660	0/0	t0022	5552	3	3	0	0	0	0	copy fasta	RAD54L2	chr3	51533719	51673660
RAD54L2_chr3_51533719_51673660	0/0	t0023	5557	3	2	0	1	0	0	copy fasta	RAD54L2	chr3	51533719	51673660
RAD54L2_chr3_51533719_51673660	0/0	t0024	5543	2	0	0	2	0	0	copy fasta	RAD54L2	chr3	51533719	51673660
RAD54L2_chr3_51533719_51673660	0/0	t0025	5544	2	1	1	0	0	0	copy fasta	RAD54L2	chr3	51533719	51673660
RAD54L2_chr3_51533719_51673660	0/0	t0026	5556	2	0	0	0	0	2	copy fasta	RAD54L2	chr3	51533719	51673660
RAD54L2_chr3_51533719_51673660	0/0	t0027	5538	2	0	0	2	0	0	copy fasta	RAD54L2	chr3	51533719	51673660
RAD54L2_chr3_51533719_51673660	0/0	t0028	5538	2	0	2	0	0	0	copy fasta	RAD54L2	chr3	51533719	51673660
RAD54L2_chr3_51533719_51673660	0/0	t0029	5551	2	2	0	0	0	0	copy fasta	RAD54L2	chr3	51533719	51673660
RAD54L2_chr3_51533719_51673660	0/0	t0030	5555	2	0	1	1	0	0	copy fasta	RAD54L2	chr3	51533719	51673660
RAD54L2_chr3_51533719_51673660	0/0	t0031	5539	1	0	1	0	0	0	copy fasta	RAD54L2	chr3	51533719	51673660
RAD54L2_chr3_51533719_51673660	0/0	t0032	5537	1	1	0	0	0	0	copy fasta	RAD54L2	chr3	51533719	51673660
RAD54L2_chr3_51533719_51673660	0/0	t0033	5539	1	0	0	1	0	0	copy fasta	RAD54L2	chr3	51533719	51673660
RAD54L2_chr3_51533719_51673660	0/0	t0034	5541	1	1	0	0	0	0	copy fasta	RAD54L2	chr3	51533719	51673660
RAD54L2_chr3_51533719_51673660	0/0	t0035	5548	1	0	0	1	0	0	copy fasta	RAD54L2	chr3	51533719	51673660
RAD54L2_chr3_51533719_51673660	0/0	t0036	5550	1	0	0	1	0	0	copy fasta	RAD54L2	chr3	51533719	51673660
RAD54L2_chr3_51533719_51673660	0/0	t0037	5552	1	0	0	1	0	0	copy fasta	RAD54L2	chr3	51533719	51673660
RAD54L2_chr3_51533719_51673660	0/0	t0038	5553	1	1	0	0	0	0	copy fasta	RAD54L2	chr3	51533719	51673660
RAD54L2_chr3_51533719_51673660	0/0	t0039	5553	1	1	0	0	0	0	copy fasta	RAD54L2	chr3	51533719	51673660
RAD54L2_chr3_51533719_51673660	0/0	t0040	5543	1	1	0	0	0	0	copy fasta	RAD54L2	chr3	51533719	51673660
RAD54L2_chr3_51533719_51673660	0/0	t0041	5554	1	0	0	1	0	0	copy fasta	RAD54L2	chr3	51533719	51673660
RAD54L2_chr3_51533719_51673660	0/0	t0042	5554	1	0	0	0	1	0	copy fasta	RAD54L2	chr3	51533719	51673660
RAD54L2_chr3_51533719_51673660	0/0	t0043	5555	1	1	0	0	0	0	copy fasta	RAD54L2	chr3	51533719	51673660
RAD54L2_chr3_51533719_51673660	0/0	t0044	5557	1	1	0	0	0	0	copy fasta	RAD54L2	chr3	51533719	51673660
RAD54L2_chr3_51533719_51673660	0/0	t0045	5558	1	1	0	0	0	0	copy fasta	RAD54L2	chr3	51533719	51673660
RAD54L2_chr3_51533719_51673660	0/0	t0046	5564	1	1	0	0	0	0	copy fasta	RAD54L2	chr3	51533719	51673660
RAD54L2_chr3_51533719_51673660	0/0	t0047	5555	1	1	0	0	0	0	copy fasta	RAD54L2	chr3	51533719	51673660
RAD54L2_chr3_51533719_51673660	0/0	t0048	5541	1	1	0	0	0	0	copy fasta	RAD54L2	chr3	51533719	51673660
RAD54L2_chr3_51533719_51673660	0/0	t0049	5555	1	1	0	0	0	0	copy fasta	RAD54L2	chr3	51533719	51673660
RAD54L2_chr3_51533719_51673660	0/0	t0050	5538	1	0	0	1	0	0	copy fasta	RAD54L2	chr3	51533719	51673660
RAD54L2_chr3_51533719_51673660	0/0	t0051	5554	1	1	0	0	0	0	copy fasta	RAD54L2	chr3	51533719	51673660
RAD54L2_chr3_51533719_51673660	0/0	t0052	5555	1	1	0	0	0	0	copy fasta	RAD54L2	chr3	51533719	51673660
RAD54L2_chr3_51533719_51673660	0/0	t0053	5555	1	0	0	1	0	0	copy fasta	RAD54L2	chr3	51533719	51673660
RAD54L2_chr3_51533719_51673660	0/0	t0054	5538	1	1	0	0	0	0	copy fasta	RAD54L2	chr3	51533719	51673660
RAD54L2_chr3_51533719_51673660	0/0	t0055	5535	1	0	0	1	0	0	copy fasta	RAD54L2	chr3	51533719	51673660
RAD54L2_chr3_51533719_51673660	0/0	t0056	5538	1	1	0	0	0	0	copy fasta	RAD54L2	chr3	51533719	51673660
RAD54L2_chr3_51533719_51673660	0/0	t0057	5538	1	1	0	0	0	0	copy fasta	RAD54L2	chr3	51533719	51673660
RAD54L2_chr3_51533719_51673660	0/0	t0058	5539	1	0	0	0	0	1	copy fasta	RAD54L2	chr3	51533719	51673660
RAD54L2_chr3_51533719_51673660	0/0	t0059	5540	1	0	0	1	0	0	copy fasta	RAD54L2	chr3	51533719	51673660
RAD54L2_chr3_51533719_51673660	0/0	t0060	5548	1	1	0	0	0	0	copy fasta	RAD54L2	chr3	51533719	51673660
RAD54L2_chr3_51533719_51673660	0/0	t0061	5549	1	0	0	0	0	1	copy fasta	RAD54L2	chr3	51533719	51673660
RAD54L2_chr3_51533719_51673660	0/0	t0062	5552	1	0	0	1	0	0	copy fasta	RAD54L2	chr3	51533719	51673660
RAD54L2_chr3_51533719_51673660	0/0	t0063	5555	1	1	0	0	0	0	copy fasta	RAD54L2	chr3	51533719	51673660
RAD54L2_chr3_51533719_51673660	0/0	t0064	5573	1	0	0	1	0	0	copy fasta	RAD54L2	chr3	51533719	51673660
RAD54L2_chr3_51533719_51673660	0/0	t0065	5556	1	1	0	0	0	0	copy fasta	RAD54L2	chr3	51533719	51673660
RAD54L2_chr3_51533719_51673660	0/0	t0066	5557	1	1	0	0	0	0	copy fasta	RAD54L2	chr3	51533719	51673660
RAD54L2_chr3_51533719_51673660	0/0	t0067	5554	1	0	0	1	0	0	copy fasta	RAD54L2	chr3	51533719	51673660