JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RAD54L2_chr3_51533719_51673660	0/0	t0068	5538	1	0	0	1	0	0	copy fasta	RAD54L2	chr3	51533719	51673660
RAD54L_chr1_46242763_46283473	1/1	t0001	835	296	64	62	122	14	32	copy fasta	RAD54L	chr1	46242763	46283473
RAD54L_chr1_46242763_46283473	0/0	t0002	835	21	16	2	2	0	1	copy fasta	RAD54L	chr1	46242763	46283473
RAD54L_chr1_46242763_46283473	0/0	t0003	835	8	8	0	0	0	0	copy fasta	RAD54L	chr1	46242763	46283473
RAD54L_chr1_46242763_46283473	0/0	t0004	835	2	2	0	0	0	0	copy fasta	RAD54L	chr1	46242763	46283473
RAD54L_chr1_46242763_46283473	0/0	t0005	835	2	2	0	0	0	0	copy fasta	RAD54L	chr1	46242763	46283473
RAD54L_chr1_46242763_46283473	0/0	t0006	834	2	0	0	2	0	0	copy fasta	RAD54L	chr1	46242763	46283473
RAD54L_chr1_46242763_46283473	0/0	t0007	834	1	0	0	0	0	1	copy fasta	RAD54L	chr1	46242763	46283473
RAD9A_chr11_67386986_67403410	1/1	t0001	911	279	64	55	120	10	28	copy fasta	RAD9A	chr11	67386986	67403410
RAD9A_chr11_67386986_67403410	0/0	t0002	913	50	21	4	25	0	0	copy fasta	RAD9A	chr11	67386986	67403410
RAD9A_chr11_67386986_67403410	0/0	t0003	911	5	1	4	0	0	0	copy fasta	RAD9A	chr11	67386986	67403410
RAD9A_chr11_67386986_67403410	0/0	t0004	911	4	0	3	0	1	0	copy fasta	RAD9A	chr11	67386986	67403410
RAD9A_chr11_67386986_67403410	0/0	t0005	911	2	1	1	0	0	0	copy fasta	RAD9A	chr11	67386986	67403410
RAD9A_chr11_67386986_67403410	0/0	t0006	911	2	2	0	0	0	0	copy fasta	RAD9A	chr11	67386986	67403410
RAD9A_chr11_67386986_67403410	0/0	t0007	911	2	0	0	0	0	2	copy fasta	RAD9A	chr11	67386986	67403410
RAD9A_chr11_67386986_67403410	0/0	t0008	911	2	0	0	0	0	2	copy fasta	RAD9A	chr11	67386986	67403410
RAD9A_chr11_67386986_67403410	0/0	t0009	911	1	0	0	1	0	0	copy fasta	RAD9A	chr11	67386986	67403410
RAD9A_chr11_67386986_67403410	0/0	t0010	913	1	1	0	0	0	0	copy fasta	RAD9A	chr11	67386986	67403410
RAD9A_chr11_67386986_67403410	0/0	t0011	911	1	1	0	0	0	0	copy fasta	RAD9A	chr11	67386986	67403410
RAD9A_chr11_67386986_67403410	0/0	t0012	911	1	1	0	0	0	0	copy fasta	RAD9A	chr11	67386986	67403410
RAD9A_chr11_67386986_67403410	0/0	t0013	911	1	1	0	0	0	0	copy fasta	RAD9A	chr11	67386986	67403410
RAD9A_chr11_67386986_67403410	0/0	t0014	911	1	0	0	0	1	0	copy fasta	RAD9A	chr11	67386986	67403410
RAD9A_chr11_67386986_67403410	0/0	t0015	911	1	0	1	0	0	0	copy fasta	RAD9A	chr11	67386986	67403410
RAD9A_chr11_67386986_67403410	0/0	t0016	911	1	1	0	0	0	0	copy fasta	RAD9A	chr11	67386986	67403410
RAD9A_chr11_67386986_67403410	0/0	t0017	911	1	1	0	0	0	0	copy fasta	RAD9A	chr11	67386986	67403410
RAD9A_chr11_67386986_67403410	0/0	t0018	911	1	1	0	0	0	0	copy fasta	RAD9A	chr11	67386986	67403410
RAD9A_chr11_67386986_67403410	0/0	t0019	911	1	1	0	0	0	0	copy fasta	RAD9A	chr11	67386986	67403410
RAD9A_chr11_67386986_67403410	0/0	t0020	913	1	1	0	0	0	0	copy fasta	RAD9A	chr11	67386986	67403410
RAD9B_chr12_110497331_110538556	1/1	t0001	2911	223	52	45	83	12	29	copy fasta	RAD9B	chr12	110497331	110538556
RAD9B_chr12_110497331_110538556	0/0	t0002	2911	34	21	3	6	1	3	copy fasta	RAD9B	chr12	110497331	110538556
RAD9B_chr12_110497331_110538556	0/0	t0003	2907	5	5	0	0	0	0	copy fasta	RAD9B	chr12	110497331	110538556
RAD9B_chr12_110497331_110538556	0/0	t0004	2909	3	3	0	0	0	0	copy fasta	RAD9B	chr12	110497331	110538556
RAD9B_chr12_110497331_110538556	0/0	t0005	2911	2	1	1	0	0	0	copy fasta	RAD9B	chr12	110497331	110538556
RAD9B_chr12_110497331_110538556	0/0	t0006	2911	2	0	0	2	0	0	copy fasta	RAD9B	chr12	110497331	110538556
RAD9B_chr12_110497331_110538556	0/0	t0007	2911	2	2	0	0	0	0	copy fasta	RAD9B	chr12	110497331	110538556
RAD9B_chr12_110497331_110538556	0/0	t0008	2911	2	0	2	0	0	0	copy fasta	RAD9B	chr12	110497331	110538556
RAD9B_chr12_110497331_110538556	0/0	t0009	2911	2	0	0	2	0	0	copy fasta	RAD9B	chr12	110497331	110538556
RAD9B_chr12_110497331_110538556	0/0	t0010	2911	1	1	0	0	0	0	copy fasta	RAD9B	chr12	110497331	110538556
RAD9B_chr12_110497331_110538556	0/0	t0011	2911	1	0	0	0	0	1	copy fasta	RAD9B	chr12	110497331	110538556
RAD9B_chr12_110497331_110538556	0/0	t0012	2911	1	1	0	0	0	0	copy fasta	RAD9B	chr12	110497331	110538556
RAD9B_chr12_110497331_110538556	0/0	t0013	2911	1	1	0	0	0	0	copy fasta	RAD9B	chr12	110497331	110538556
RAD9B_chr12_110497331_110538556	0/0	t0014	2911	1	0	1	0	0	0	copy fasta	RAD9B	chr12	110497331	110538556
RAD9B_chr12_110497331_110538556	0/0	t0015	2911	1	1	0	0	0	0	copy fasta	RAD9B	chr12	110497331	110538556
RAD9B_chr12_110497331_110538556	0/0	t0016	2911	1	0	0	0	1	0	copy fasta	RAD9B	chr12	110497331	110538556
RAD9B_chr12_110497331_110538556	0/0	t0017	2911	1	0	0	1	0	0	copy fasta	RAD9B	chr12	110497331	110538556
RAD9B_chr12_110497331_110538556	0/0	t0018	2911	1	0	0	0	0	1	copy fasta	RAD9B	chr12	110497331	110538556
RADIL_chr7_4792055_4888716	1/1	t0001	2509	96	9	20	42	12	11	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	t0002	2509	69	5	14	34	1	15	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	t0003	2509	11	0	0	4	0	7	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	t0004	2502	9	9	0	0	0	0	copy fasta	RADIL	chr7	4792055	4888716