JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RADIL_chr7_4792055_4888716	0/0	t0005	2509	7	7	0	0	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	t0006	2509	6	0	1	2	0	3	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	t0007	2508	5	4	1	0	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	t0008	2511	4	4	0	0	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	t0009	2507	4	3	1	0	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	t0010	2502	4	4	0	0	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	t0011	2509	3	0	0	3	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	t0012	2510	3	0	0	3	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	t0013	2509	3	3	0	0	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	t0014	2502	3	1	2	0	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	t0015	2509	3	0	0	3	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	t0016	2509	3	3	0	0	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	t0017	2509	3	0	2	0	1	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	t0018	2511	2	2	0	0	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	t0019	2508	2	0	2	0	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	t0020	2502	2	2	0	0	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	t0021	2511	2	2	0	0	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	t0022	2509	2	2	0	0	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	t0023	2508	2	0	2	0	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	t0024	2507	2	2	0	0	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	t0025	2507	2	2	0	0	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	t0026	2508	2	0	1	0	0	1	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	t0027	2509	2	2	0	0	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	t0028	2511	2	2	0	0	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	t0029	2509	1	0	0	1	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	t0030	2509	1	1	0	0	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	t0031	2509	1	1	0	0	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	t0032	2509	1	1	0	0	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	t0033	2507	1	1	0	0	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	t0034	2509	1	0	1	0	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	t0035	2511	1	1	0	0	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	t0036	2509	1	1	0	0	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	t0037	2500	1	1	0	0	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	t0038	2508	1	1	0	0	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	t0039	2507	1	1	0	0	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	t0040	2509	1	0	0	1	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	t0041	2509	1	1	0	0	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	t0042	2509	1	1	0	0	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	t0043	2509	1	1	0	0	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	t0044	2511	1	1	0	0	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	t0045	2509	1	1	0	0	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	t0046	2509	1	1	0	0	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	t0047	2509	1	1	0	0	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	t0048	2502	1	1	0	0	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	t0049	2509	1	0	1	0	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	t0050	2509	1	0	0	1	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	t0051	2509	1	0	0	0	0	1	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	t0052	2509	1	1	0	0	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	t0053	2509	1	1	0	0	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	t0054	2511	1	1	0	0	0	0	copy fasta	RADIL	chr7	4792055	4888716