JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RADIL_chr7_4792055_4888716	0/0	t0055	2509	1	0	1	0	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	t0056	2507	1	1	0	0	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	t0057	2509	1	0	0	0	1	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	t0058	2509	1	0	0	1	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	t0059	2510	1	0	0	1	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	t0060	2509	1	0	0	0	1	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	t0061	2507	1	1	0	0	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	t0062	2509	1	0	1	0	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADX_chrX_106606978_106684439	1/1	t0001	1285	167	37	26	77	7	18	copy fasta	RADX	chrX	106606978	106684439
RADX_chrX_106606978_106684439	0/0	t0002	1285	29	28	1	0	0	0	copy fasta	RADX	chrX	106606978	106684439
RADX_chrX_106606978_106684439	0/0	t0003	1285	2	0	0	2	0	0	copy fasta	RADX	chrX	106606978	106684439
RADX_chrX_106606978_106684439	0/0	t0004	1285	2	2	0	0	0	0	copy fasta	RADX	chrX	106606978	106684439
RADX_chrX_106606978_106684439	0/0	t0005	1285	1	0	0	1	0	0	copy fasta	RADX	chrX	106606978	106684439
RADX_chrX_106606978_106684439	0/0	t0006	1285	1	1	0	0	0	0	copy fasta	RADX	chrX	106606978	106684439
RADX_chrX_106606978_106684439	0/0	t0007	1286	1	1	0	0	0	0	copy fasta	RADX	chrX	106606978	106684439
RADX_chrX_106606978_106684439	0/0	t0008	1285	1	1	0	0	0	0	copy fasta	RADX	chrX	106606978	106684439
RAE1_chr20_57346255_57384202	1/0	t0001	1279	108	31	20	35	5	16	copy fasta	RAE1	chr20	57346255	57384202
RAE1_chr20_57346255_57384202	0/0	t0002	1279	75	0	17	40	7	11	copy fasta	RAE1	chr20	57346255	57384202
RAE1_chr20_57346255_57384202	0/1	t0003	1279	62	0	13	37	3	8	copy fasta	RAE1	chr20	57346255	57384202
RAE1_chr20_57346255_57384202	0/0	t0004	1279	37	20	5	12	0	0	copy fasta	RAE1	chr20	57346255	57384202
RAE1_chr20_57346255_57384202	0/0	t0005	1279	9	5	2	0	1	1	copy fasta	RAE1	chr20	57346255	57384202
RAE1_chr20_57346255_57384202	0/0	t0006	1279	9	8	1	0	0	0	copy fasta	RAE1	chr20	57346255	57384202
RAE1_chr20_57346255_57384202	0/0	t0007	1279	7	3	0	4	0	0	copy fasta	RAE1	chr20	57346255	57384202
RAE1_chr20_57346255_57384202	0/0	t0008	1279	6	5	1	0	0	0	copy fasta	RAE1	chr20	57346255	57384202
RAE1_chr20_57346255_57384202	0/0	t0009	1279	6	5	1	0	0	0	copy fasta	RAE1	chr20	57346255	57384202
RAE1_chr20_57346255_57384202	0/0	t0010	1279	4	4	0	0	0	0	copy fasta	RAE1	chr20	57346255	57384202
RAE1_chr20_57346255_57384202	0/0	t0011	1279	3	2	0	1	0	0	copy fasta	RAE1	chr20	57346255	57384202
RAE1_chr20_57346255_57384202	0/0	t0012	1279	3	2	1	0	0	0	copy fasta	RAE1	chr20	57346255	57384202
RAE1_chr20_57346255_57384202	0/0	t0013	1279	2	2	0	0	0	0	copy fasta	RAE1	chr20	57346255	57384202
RAE1_chr20_57346255_57384202	0/0	t0014	1279	2	2	0	0	0	0	copy fasta	RAE1	chr20	57346255	57384202
RAE1_chr20_57346255_57384202	0/0	t0015	1279	2	2	0	0	0	0	copy fasta	RAE1	chr20	57346255	57384202
RAE1_chr20_57346255_57384202	0/0	t0016	1279	1	1	0	0	0	0	copy fasta	RAE1	chr20	57346255	57384202
RAE1_chr20_57346255_57384202	0/0	t0017	1279	1	0	0	1	0	0	copy fasta	RAE1	chr20	57346255	57384202
RAE1_chr20_57346255_57384202	0/0	t0018	1279	1	1	0	0	0	0	copy fasta	RAE1	chr20	57346255	57384202
RAE1_chr20_57346255_57384202	0/0	t0019	1268	1	0	1	0	0	0	copy fasta	RAE1	chr20	57346255	57384202
RAE1_chr20_57346255_57384202	0/0	t0020	1279	1	1	0	0	0	0	copy fasta	RAE1	chr20	57346255	57384202
RAE1_chr20_57346255_57384202	0/0	t0021	1279	1	1	0	0	0	0	copy fasta	RAE1	chr20	57346255	57384202
RAE1_chr20_57346255_57384202	0/0	t0022	1279	1	1	0	0	0	0	copy fasta	RAE1	chr20	57346255	57384202
RAET1E_chr6_149878179_149903113	1/0	t0001	5733	112	20	28	38	8	17	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/0	t0002	5732	92	2	11	67	3	9	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/0	t0003	5732	56	0	7	45	0	4	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/0	t0004	5732	33	3	16	6	4	4	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/0	t0005	5733	8	8	0	0	0	0	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/0	t0006	5734	8	8	0	0	0	0	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/1	t0007	5733	8	1	5	0	1	0	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/0	t0008	5732	7	7	0	0	0	0	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/0	t0009	5732	7	7	0	0	0	0	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/0	t0010	5734	6	1	4	0	0	1	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/0	t0011	5733	5	5	0	0	0	0	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/0	t0012	5732	3	2	1	0	0	0	copy fasta	RAET1E	chr6	149878179	149903113