JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
RAET1E_chr6_149878179_149903113	0/0	t0013	5732	3	3	0	0	0	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/0	t0014	5733	3	3	0	0	0	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/0	t0015	5733	2	0	0	0	2	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/0	t0016	5731	2	1	0	1	0	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/0	t0017	5733	2	2	0	0	0	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/0	t0018	5733	2	0	2	0	0	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/0	t0019	5733	2	0	2	0	0	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/0	t0020	5732	2	0	0	2	0	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/0	t0021	5732	2	0	0	2	0	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/0	t0022	5732	2	0	0	0	2	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/0	t0023	5739	2	2	0	0	0	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/0	t0024	5740	2	2	0	0	0	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/0	t0025	5732	2	2	0	0	0	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/0	t0026	5732	1	1	0	0	0	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/0	t0027	5732	1	0	0	0	1	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/0	t0028	5732	1	0	0	1	0	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/0	t0029	5732	1	0	0	1	0	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/0	t0030	5732	1	0	0	1	0	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/0	t0031	5732	1	0	0	1	0	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/0	t0032	5732	1	0	0	1	0	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/0	t0033	5732	1	0	0	1	0	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/0	t0034	5732	1	1	0	0	0	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/0	t0035	5733	1	0	0	1	0	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/0	t0036	5732	1	0	1	0	0	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/0	t0037	5732	1	0	0	1	0	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/0	t0038	5718	1	0	0	1	0	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/0	t0039	5732	1	0	0	1	0	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/0	t0040	5732	1	0	0	0	1	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/0	t0041	5732	1	0	0	1	0	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/0	t0042	5733	1	1	0	0	0	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/0	t0043	5733	1	1	0	0	0	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/0	t0044	5734	1	0	1	0	0	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/0	t0045	5733	1	1	0	0	0	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/0	t0046	5733	1	0	0	1	0	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/0	t0047	5734	1	1	0	0	0	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/0	t0048	5733	1	1	0	0	0	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/0	t0049	5734	1	1	0	0	0	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/0	t0050	5733	1	1	0	0	0	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/0	t0051	5744	1	1	0	0	0	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/0	t0052	5733	1	0	0	1	0	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/0	t0053	5732	1	0	1	0	0	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/0	t0054	5733	1	0	0	0	1	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/0	t0055	5733	1	0	0	0	1	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/0	t0056	5734	1	1	0	0	0	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/0	t0057	5732	1	1	0	0	0	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/0	t0058	5732	1	0	0	0	1	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/0	t0059	5732	1	0	1	0	0	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/0	t0060	5739	1	1	0	0	0	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/0	t0061	5744	1	1	0	0	0	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/0	t0062	5734	1	1	0	0	0	copy fasta	RAET1E	chr6	149878179	149903113