Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ATXN7L3_chr17_44186805_44204884	0/0	t0006	2909	8	8	0	0	0	0	copy fasta	ATXN7L3	chr17	44186805	44204884
ATXN7L3_chr17_44186805_44204884	0/0	t0007	2909	6	0	1	0	0	5	copy fasta	ATXN7L3	chr17	44186805	44204884
ATXN7L3_chr17_44186805_44204884	0/0	t0008	2909	3	0	0	3	0	0	copy fasta	ATXN7L3	chr17	44186805	44204884
ATXN7L3_chr17_44186805_44204884	0/0	t0009	2909	2	1	1	0	0	0	copy fasta	ATXN7L3	chr17	44186805	44204884
ATXN7L3_chr17_44186805_44204884	0/0	t0010	2909	2	2	0	0	0	0	copy fasta	ATXN7L3	chr17	44186805	44204884
ATXN7L3_chr17_44186805_44204884	0/0	t0011	2909	2	2	0	0	0	0	copy fasta	ATXN7L3	chr17	44186805	44204884
ATXN7L3_chr17_44186805_44204884	0/0	t0012	2909	2	2	0	0	0	0	copy fasta	ATXN7L3	chr17	44186805	44204884
ATXN7L3_chr17_44186805_44204884	0/0	t0013	2908	2	2	0	0	0	0	copy fasta	ATXN7L3	chr17	44186805	44204884
ATXN7L3_chr17_44186805_44204884	0/0	t0014	2909	1	0	0	1	0	0	copy fasta	ATXN7L3	chr17	44186805	44204884
ATXN7L3_chr17_44186805_44204884	0/0	t0015	2909	1	1	0	0	0	0	copy fasta	ATXN7L3	chr17	44186805	44204884
ATXN7L3_chr17_44186805_44204884	0/0	t0016	2908	1	1	0	0	0	0	copy fasta	ATXN7L3	chr17	44186805	44204884
ATXN7L3_chr17_44186805_44204884	0/0	t0017	2909	1	0	0	1	0	0	copy fasta	ATXN7L3	chr17	44186805	44204884
ATXN7L3_chr17_44186805_44204884	0/0	t0018	2909	1	1	0	0	0	0	copy fasta	ATXN7L3	chr17	44186805	44204884
ATXN7L3_chr17_44186805_44204884	0/0	t0019	2909	1	0	1	0	0	0	copy fasta	ATXN7L3	chr17	44186805	44204884
ATXN7L3_chr17_44186805_44204884	0/0	t0020	2908	1	0	0	0	0	1	copy fasta	ATXN7L3	chr17	44186805	44204884
ATXN7L3_chr17_44186805_44204884	0/0	t0021	2909	1	1	0	0	0	0	copy fasta	ATXN7L3	chr17	44186805	44204884
ATXN7L3_chr17_44186805_44204884	0/0	t0022	2909	1	0	0	0	1	0	copy fasta	ATXN7L3	chr17	44186805	44204884
ATXN7L3_chr17_44186805_44204884	0/0	t0023	2909	1	0	1	0	0	0	copy fasta	ATXN7L3	chr17	44186805	44204884
ATXN7L3_chr17_44186805_44204884	0/0	t0024	2909	1	1	0	0	0	0	copy fasta	ATXN7L3	chr17	44186805	44204884
ATXN7L3_chr17_44186805_44204884	0/0	t0025	2908	1	0	1	0	0	0	copy fasta	ATXN7L3	chr17	44186805	44204884
ATXN7L3_chr17_44186805_44204884	0/0	t0026	2909	1	0	0	1	0	0	copy fasta	ATXN7L3	chr17	44186805	44204884
ATXN7L3_chr17_44186805_44204884	0/0	t0027	2909	1	0	0	1	0	0	copy fasta	ATXN7L3	chr17	44186805	44204884
ATXN7L3_chr17_44186805_44204884	0/0	t0028	2909	1	0	0	1	0	0	copy fasta	ATXN7L3	chr17	44186805	44204884
ATXN7L3_chr17_44186805_44204884	0/0	t0029	2909	1	0	0	1	0	0	copy fasta	ATXN7L3	chr17	44186805	44204884
ATXN7L3_chr17_44186805_44204884	0/0	t0030	2909	1	0	1	0	0	0	copy fasta	ATXN7L3	chr17	44186805	44204884
ATXN7_chr3_63858867_64008462	1/0	t0001	4398	61	9	14	33	2	2	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	t0002	4378	51	9	1	36	1	4	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	t0003	4378	42	0	10	26	1	5	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	t0004	4400	14	13	1	0	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	t0005	4379	9	5	0	4	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	t0006	4399	8	5	0	2	0	1	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	t0007	4398	7	2	3	0	0	2	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	t0008	4379	6	1	0	4	1	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	t0009	4397	6	1	1	4	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	t0010	4404	5	0	0	5	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/1	t0011	4379	4	0	1	1	0	1	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	t0012	4401	4	1	0	2	0	1	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	t0013	4397	4	2	0	2	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	t0014	4384	4	4	0	0	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	t0015	4378	3	0	0	3	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	t0016	4379	3	0	1	2	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	t0017	4378	3	3	0	0	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	t0018	4394	3	2	1	0	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	t0019	4397	3	1	0	0	2	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	t0020	4395	3	3	0	0	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	t0021	4403	3	0	3	0	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	t0022	4379	2	0	0	2	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	t0023	4378	2	0	0	2	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	t0024	4401	2	1	1	0	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	t0025	4395	2	2	0	0	0	0	copy fasta	ATXN7	chr3	63858867	64008462