JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RALA_chr7_39618572_39713120	0/0	t0001	2167	187	55	31	87	2	12	copy fasta	RALA	chr7	39618572	39713120
RALA_chr7_39618572_39713120	1/1	t0002	2167	101	7	20	59	4	9	copy fasta	RALA	chr7	39618572	39713120
RALA_chr7_39618572_39713120	0/0	t0003	2168	50	13	13	5	6	13	copy fasta	RALA	chr7	39618572	39713120
RALA_chr7_39618572_39713120	0/0	t0004	2155	8	8	0	0	0	0	copy fasta	RALA	chr7	39618572	39713120
RALA_chr7_39618572_39713120	0/0	t0005	2167	3	0	3	0	0	0	copy fasta	RALA	chr7	39618572	39713120
RALA_chr7_39618572_39713120	0/0	t0006	2167	3	0	0	3	0	0	copy fasta	RALA	chr7	39618572	39713120
RALA_chr7_39618572_39713120	0/0	t0007	2167	3	0	3	0	0	0	copy fasta	RALA	chr7	39618572	39713120
RALA_chr7_39618572_39713120	0/0	t0008	2167	2	2	0	0	0	0	copy fasta	RALA	chr7	39618572	39713120
RALA_chr7_39618572_39713120	0/0	t0009	2167	1	0	0	0	0	1	copy fasta	RALA	chr7	39618572	39713120
RALA_chr7_39618572_39713120	0/0	t0010	2141	1	1	0	0	0	0	copy fasta	RALA	chr7	39618572	39713120
RALA_chr7_39618572_39713120	0/0	t0011	2168	1	0	0	0	0	1	copy fasta	RALA	chr7	39618572	39713120
RALA_chr7_39618572_39713120	0/0	t0012	2167	1	0	0	1	0	0	copy fasta	RALA	chr7	39618572	39713120
RALA_chr7_39618572_39713120	0/0	t0013	2167	1	1	0	0	0	0	copy fasta	RALA	chr7	39618572	39713120
RALA_chr7_39618572_39713120	0/0	t0014	2167	1	1	0	0	0	0	copy fasta	RALA	chr7	39618572	39713120
RALA_chr7_39618572_39713120	0/0	t0015	2167	1	0	0	1	0	0	copy fasta	RALA	chr7	39618572	39713120
RALA_chr7_39618572_39713120	0/0	t0016	2167	1	0	0	1	0	0	copy fasta	RALA	chr7	39618572	39713120
RALA_chr7_39618572_39713120	0/0	t0017	2167	1	0	0	1	0	0	copy fasta	RALA	chr7	39618572	39713120
RALBP1_chr18_9470513_9543114	0/1	t0001	2412	154	13	34	85	10	11	copy fasta	RALBP1	chr18	9470513	9543114
RALBP1_chr18_9470513_9543114	0/0	t0002	2412	98	5	17	60	5	11	copy fasta	RALBP1	chr18	9470513	9543114
RALBP1_chr18_9470513_9543114	1/0	t0003	2412	27	24	2	0	0	0	copy fasta	RALBP1	chr18	9470513	9543114
RALBP1_chr18_9470513_9543114	0/0	t0004	2412	18	10	6	0	0	2	copy fasta	RALBP1	chr18	9470513	9543114
RALBP1_chr18_9470513_9543114	0/0	t0005	2412	12	12	0	0	0	0	copy fasta	RALBP1	chr18	9470513	9543114
RALBP1_chr18_9470513_9543114	0/0	t0006	2412	9	7	0	0	0	2	copy fasta	RALBP1	chr18	9470513	9543114
RALBP1_chr18_9470513_9543114	0/0	t0007	2412	7	6	1	0	0	0	copy fasta	RALBP1	chr18	9470513	9543114
RALBP1_chr18_9470513_9543114	0/0	t0008	2412	6	5	1	0	0	0	copy fasta	RALBP1	chr18	9470513	9543114
RALBP1_chr18_9470513_9543114	0/0	t0009	2412	4	0	2	0	2	0	copy fasta	RALBP1	chr18	9470513	9543114
RALBP1_chr18_9470513_9543114	0/0	t0010	2412	3	3	0	0	0	0	copy fasta	RALBP1	chr18	9470513	9543114
RALBP1_chr18_9470513_9543114	0/0	t0011	2412	3	0	0	3	0	0	copy fasta	RALBP1	chr18	9470513	9543114
RALBP1_chr18_9470513_9543114	0/0	t0012	2412	2	2	0	0	0	0	copy fasta	RALBP1	chr18	9470513	9543114
RALBP1_chr18_9470513_9543114	0/0	t0013	2409	2	2	0	0	0	0	copy fasta	RALBP1	chr18	9470513	9543114
RALBP1_chr18_9470513_9543114	0/0	t0014	2412	2	2	0	0	0	0	copy fasta	RALBP1	chr18	9470513	9543114
RALBP1_chr18_9470513_9543114	0/0	t0015	2412	1	1	0	0	0	0	copy fasta	RALBP1	chr18	9470513	9543114
RALBP1_chr18_9470513_9543114	0/0	t0016	2412	1	1	0	0	0	0	copy fasta	RALBP1	chr18	9470513	9543114
RALBP1_chr18_9470513_9543114	0/0	t0017	2412	1	0	1	0	0	0	copy fasta	RALBP1	chr18	9470513	9543114
RALBP1_chr18_9470513_9543114	0/0	t0018	2412	1	0	0	1	0	0	copy fasta	RALBP1	chr18	9470513	9543114
RALBP1_chr18_9470513_9543114	0/0	t0019	2412	1	0	1	0	0	0	copy fasta	RALBP1	chr18	9470513	9543114
RALBP1_chr18_9470513_9543114	0/0	t0020	2412	1	0	1	0	0	0	copy fasta	RALBP1	chr18	9470513	9543114
RALBP1_chr18_9470513_9543114	0/0	t0021	2412	1	0	0	0	0	1	copy fasta	RALBP1	chr18	9470513	9543114
RALBP1_chr18_9470513_9543114	0/0	t0022	2409	1	1	0	0	0	0	copy fasta	RALBP1	chr18	9470513	9543114
RALBP1_chr18_9470513_9543114	0/0	t0023	2412	1	0	0	0	0	1	copy fasta	RALBP1	chr18	9470513	9543114
RALBP1_chr18_9470513_9543114	0/0	t0024	2412	1	1	0	0	0	0	copy fasta	RALBP1	chr18	9470513	9543114
RALBP1_chr18_9470513_9543114	0/0	t0025	2412	1	0	0	1	0	0	copy fasta	RALBP1	chr18	9470513	9543114
RALBP1_chr18_9470513_9543114	0/0	t0026	2412	1	1	0	0	0	0	copy fasta	RALBP1	chr18	9470513	9543114
RALBP1_chr18_9470513_9543114	0/0	t0027	2412	1	0	0	1	0	0	copy fasta	RALBP1	chr18	9470513	9543114
RALBP1_chr18_9470513_9543114	0/0	t0028	2412	1	0	0	1	0	0	copy fasta	RALBP1	chr18	9470513	9543114
RALBP1_chr18_9470513_9543114	0/0	t0029	2412	1	0	0	0	1	0	copy fasta	RALBP1	chr18	9470513	9543114
RALB_chr2_120247852_120299710	0/0	t0001	1627	172	39	34	58	13	28	copy fasta	RALB	chr2	120247852	120299710
RALB_chr2_120247852_120299710	1/1	t0002	1627	131	20	27	71	2	9	copy fasta	RALB	chr2	120247852	120299710
RALB_chr2_120247852_120299710	0/0	t0003	1627	15	0	1	14	0	0	copy fasta	RALB	chr2	120247852	120299710
RALB_chr2_120247852_120299710	0/0	t0004	1627	11	10	1	0	0	0	copy fasta	RALB	chr2	120247852	120299710