JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RALB_chr2_120247852_120299710	0/0	t0005	1627	10	10	0	0	0	0	copy fasta	RALB	chr2	120247852	120299710
RALB_chr2_120247852_120299710	0/0	t0006	1627	6	4	2	0	0	0	copy fasta	RALB	chr2	120247852	120299710
RALB_chr2_120247852_120299710	0/0	t0007	1627	4	0	0	2	0	2	copy fasta	RALB	chr2	120247852	120299710
RALB_chr2_120247852_120299710	0/0	t0008	1627	2	1	1	0	0	0	copy fasta	RALB	chr2	120247852	120299710
RALB_chr2_120247852_120299710	0/0	t0009	1627	2	2	0	0	0	0	copy fasta	RALB	chr2	120247852	120299710
RALB_chr2_120247852_120299710	0/0	t0010	1627	1	0	0	1	0	0	copy fasta	RALB	chr2	120247852	120299710
RALB_chr2_120247852_120299710	0/0	t0011	1627	1	0	0	1	0	0	copy fasta	RALB	chr2	120247852	120299710
RALB_chr2_120247852_120299710	0/0	t0012	1627	1	0	0	0	0	1	copy fasta	RALB	chr2	120247852	120299710
RALB_chr2_120247852_120299710	0/0	t0013	1627	1	0	0	1	0	0	copy fasta	RALB	chr2	120247852	120299710
RALB_chr2_120247852_120299710	0/0	t0014	1627	1	0	0	0	1	0	copy fasta	RALB	chr2	120247852	120299710
RALGAPA1_chr14_35533356_35814295	0/1	t0001	1819	266	76	40	106	4	39	copy fasta	RALGAPA1	chr14	35533356	35814295
RALGAPA1_chr14_35533356_35814295	0/0	t0002	1819	1	0	0	0	0	1	copy fasta	RALGAPA1	chr14	35533356	35814295
RALGAPA1_chr14_35533356_35814295	0/0	t0003	1819	1	1	0	0	0	0	copy fasta	RALGAPA1	chr14	35533356	35814295
RALGAPA1_chr14_35533356_35814295	0/0	t0004	1819	1	0	0	1	0	0	copy fasta	RALGAPA1	chr14	35533356	35814295
RALGAPA1_chr14_35533356_35814295	0/0	t0005	1819	1	0	0	1	0	0	copy fasta	RALGAPA1	chr14	35533356	35814295
RALGAPA1_chr14_35533356_35814295	1/0	t0006	1819	1	0	0	0	0	0	copy fasta	RALGAPA1	chr14	35533356	35814295
RALGAPA1_chr14_35533356_35814295	0/0	t0007	1845	1	1	0	0	0	0	copy fasta	RALGAPA1	chr14	35533356	35814295
RALGAPA2_chr20_20384530_20717644	0/0	t0001	3924	18	4	2	9	0	3	copy fasta	RALGAPA2	chr20	20384530	20717644
RALGAPA2_chr20_20384530_20717644	0/0	t0002	3924	15	7	0	8	0	0	copy fasta	RALGAPA2	chr20	20384530	20717644
RALGAPA2_chr20_20384530_20717644	0/0	t0003	3924	9	3	2	3	0	1	copy fasta	RALGAPA2	chr20	20384530	20717644
RALGAPA2_chr20_20384530_20717644	0/0	t0004	3927	7	0	0	7	0	0	copy fasta	RALGAPA2	chr20	20384530	20717644
RALGAPA2_chr20_20384530_20717644	0/0	t0005	3924	6	0	2	4	0	0	copy fasta	RALGAPA2	chr20	20384530	20717644
RALGAPA2_chr20_20384530_20717644	0/0	t0006	3927	6	0	3	3	0	0	copy fasta	RALGAPA2	chr20	20384530	20717644
RALGAPA2_chr20_20384530_20717644	0/0	t0007	3934	5	3	2	0	0	0	copy fasta	RALGAPA2	chr20	20384530	20717644
RALGAPA2_chr20_20384530_20717644	0/0	t0008	3927	5	2	0	3	0	0	copy fasta	RALGAPA2	chr20	20384530	20717644
RALGAPA2_chr20_20384530_20717644	0/0	t0009	3927	4	0	0	4	0	0	copy fasta	RALGAPA2	chr20	20384530	20717644
RALGAPA2_chr20_20384530_20717644	0/0	t0010	3924	3	1	0	0	0	2	copy fasta	RALGAPA2	chr20	20384530	20717644
RALGAPA2_chr20_20384530_20717644	1/0	t0011	3924	3	2	0	0	0	0	copy fasta	RALGAPA2	chr20	20384530	20717644
RALGAPA2_chr20_20384530_20717644	0/0	t0012	3924	2	2	0	0	0	0	copy fasta	RALGAPA2	chr20	20384530	20717644
RALGAPA2_chr20_20384530_20717644	0/0	t0013	3922	2	0	2	0	0	0	copy fasta	RALGAPA2	chr20	20384530	20717644
RALGAPA2_chr20_20384530_20717644	0/0	t0014	3937	2	2	0	0	0	0	copy fasta	RALGAPA2	chr20	20384530	20717644
RALGAPA2_chr20_20384530_20717644	0/0	t0015	3924	1	1	0	0	0	0	copy fasta	RALGAPA2	chr20	20384530	20717644
RALGAPA2_chr20_20384530_20717644	0/0	t0016	3924	1	0	0	1	0	0	copy fasta	RALGAPA2	chr20	20384530	20717644
RALGAPA2_chr20_20384530_20717644	0/0	t0017	3924	1	1	0	0	0	0	copy fasta	RALGAPA2	chr20	20384530	20717644
RALGAPA2_chr20_20384530_20717644	0/0	t0018	3934	1	1	0	0	0	0	copy fasta	RALGAPA2	chr20	20384530	20717644
RALGAPA2_chr20_20384530_20717644	0/0	t0019	3934	1	0	0	1	0	0	copy fasta	RALGAPA2	chr20	20384530	20717644
RALGAPA2_chr20_20384530_20717644	0/0	t0020	3924	1	0	0	1	0	0	copy fasta	RALGAPA2	chr20	20384530	20717644
RALGAPA2_chr20_20384530_20717644	0/0	t0021	3934	1	1	0	0	0	0	copy fasta	RALGAPA2	chr20	20384530	20717644
RALGAPA2_chr20_20384530_20717644	0/0	t0022	3924	1	1	0	0	0	0	copy fasta	RALGAPA2	chr20	20384530	20717644
RALGAPA2_chr20_20384530_20717644	0/0	t0023	3924	1	0	0	0	0	1	copy fasta	RALGAPA2	chr20	20384530	20717644
RALGAPA2_chr20_20384530_20717644	0/0	t0024	3935	1	1	0	0	0	0	copy fasta	RALGAPA2	chr20	20384530	20717644
RALGAPA2_chr20_20384530_20717644	0/0	t0025	3929	1	1	0	0	0	0	copy fasta	RALGAPA2	chr20	20384530	20717644
RALGAPA2_chr20_20384530_20717644	0/0	t0026	3929	1	1	0	0	0	0	copy fasta	RALGAPA2	chr20	20384530	20717644
RALGAPA2_chr20_20384530_20717644	0/0	t0027	3924	1	0	0	1	0	0	copy fasta	RALGAPA2	chr20	20384530	20717644
RALGAPA2_chr20_20384530_20717644	0/0	t0028	3924	1	1	0	0	0	0	copy fasta	RALGAPA2	chr20	20384530	20717644
RALGAPA2_chr20_20384530_20717644	0/0	t0029	3924	1	0	0	1	0	0	copy fasta	RALGAPA2	chr20	20384530	20717644
RALGAPA2_chr20_20384530_20717644	0/0	t0030	3924	1	0	0	0	0	1	copy fasta	RALGAPA2	chr20	20384530	20717644
RALGAPA2_chr20_20384530_20717644	0/0	t0031	3924	1	1	0	0	0	0	copy fasta	RALGAPA2	chr20	20384530	20717644
RALGAPA2_chr20_20384530_20717644	0/0	t0032	3935	1	1	0	0	0	0	copy fasta	RALGAPA2	chr20	20384530	20717644
RALGAPA2_chr20_20384530_20717644	0/0	t0033	3935	1	1	0	0	0	0	copy fasta	RALGAPA2	chr20	20384530	20717644