JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RALGAPA2_chr20_20384530_20717644	0/0	t0034	3935	1	0	1	0	0	0	copy fasta	RALGAPA2	chr20	20384530	20717644
RALGAPA2_chr20_20384530_20717644	0/0	t0035	3924	1	0	0	1	0	0	copy fasta	RALGAPA2	chr20	20384530	20717644
RALGAPA2_chr20_20384530_20717644	0/0	t0036	3930	1	1	0	0	0	0	copy fasta	RALGAPA2	chr20	20384530	20717644
RALGAPA2_chr20_20384530_20717644	0/0	t0037	3941	1	1	0	0	0	0	copy fasta	RALGAPA2	chr20	20384530	20717644
RALGAPA2_chr20_20384530_20717644	0/0	t0038	3927	1	0	0	1	0	0	copy fasta	RALGAPA2	chr20	20384530	20717644
RALGAPA2_chr20_20384530_20717644	0/0	t0039	3937	1	1	0	0	0	0	copy fasta	RALGAPA2	chr20	20384530	20717644
RALGAPA2_chr20_20384530_20717644	0/0	t0040	3927	1	0	0	1	0	0	copy fasta	RALGAPA2	chr20	20384530	20717644
RALGAPA2_chr20_20384530_20717644	0/0	t0041	3927	1	0	0	1	0	0	copy fasta	RALGAPA2	chr20	20384530	20717644
RALGAPA2_chr20_20384530_20717644	0/0	t0042	3938	1	1	0	0	0	0	copy fasta	RALGAPA2	chr20	20384530	20717644
RALGAPA2_chr20_20384530_20717644	0/0	t0043	3927	1	0	0	1	0	0	copy fasta	RALGAPA2	chr20	20384530	20717644
RALGAPA2_chr20_20384530_20717644	0/0	t0044	3934	1	1	0	0	0	0	copy fasta	RALGAPA2	chr20	20384530	20717644
RALGAPA2_chr20_20384530_20717644	0/0	t0045	3930	1	1	0	0	0	0	copy fasta	RALGAPA2	chr20	20384530	20717644
RALGAPA2_chr20_20384530_20717644	0/0	t0046	3930	1	0	0	1	0	0	copy fasta	RALGAPA2	chr20	20384530	20717644
RALGAPA2_chr20_20384530_20717644	0/0	t0047	3936	1	1	0	0	0	0	copy fasta	RALGAPA2	chr20	20384530	20717644
RALGAPA2_chr20_20384530_20717644	0/0	t0048	3936	1	1	0	0	0	0	copy fasta	RALGAPA2	chr20	20384530	20717644
RALGAPA2_chr20_20384530_20717644	0/1	t0049	3939	1	0	0	0	0	0	copy fasta	RALGAPA2	chr20	20384530	20717644
RALGAPB_chr20_38467843_38583858	0/1	t0001	4151	85	13	14	44	1	12	copy fasta	RALGAPB	chr20	38467843	38583858
RALGAPB_chr20_38467843_38583858	0/0	t0002	4149	40	15	9	8	3	5	copy fasta	RALGAPB	chr20	38467843	38583858
RALGAPB_chr20_38467843_38583858	0/0	t0003	4153	28	7	6	9	2	4	copy fasta	RALGAPB	chr20	38467843	38583858
RALGAPB_chr20_38467843_38583858	0/0	t0004	4143	11	10	1	0	0	0	copy fasta	RALGAPB	chr20	38467843	38583858
RALGAPB_chr20_38467843_38583858	0/0	t0005	4154	9	9	0	0	0	0	copy fasta	RALGAPB	chr20	38467843	38583858
RALGAPB_chr20_38467843_38583858	0/0	t0006	4147	7	7	0	0	0	0	copy fasta	RALGAPB	chr20	38467843	38583858
RALGAPB_chr20_38467843_38583858	0/0	t0007	4147	4	1	3	0	0	0	copy fasta	RALGAPB	chr20	38467843	38583858
RALGAPB_chr20_38467843_38583858	0/0	t0008	4149	3	3	0	0	0	0	copy fasta	RALGAPB	chr20	38467843	38583858
RALGAPB_chr20_38467843_38583858	0/0	t0009	4157	3	3	0	0	0	0	copy fasta	RALGAPB	chr20	38467843	38583858
RALGAPB_chr20_38467843_38583858	0/0	t0010	4152	3	3	0	0	0	0	copy fasta	RALGAPB	chr20	38467843	38583858
RALGAPB_chr20_38467843_38583858	0/0	t0011	4159	2	1	1	0	0	0	copy fasta	RALGAPB	chr20	38467843	38583858
RALGAPB_chr20_38467843_38583858	0/0	t0012	4156	2	1	1	0	0	0	copy fasta	RALGAPB	chr20	38467843	38583858
RALGAPB_chr20_38467843_38583858	1/0	t0013	4149	1	0	0	0	0	0	copy fasta	RALGAPB	chr20	38467843	38583858
RALGAPB_chr20_38467843_38583858	0/0	t0014	4151	1	0	0	1	0	0	copy fasta	RALGAPB	chr20	38467843	38583858
RALGAPB_chr20_38467843_38583858	0/0	t0015	4153	1	0	1	0	0	0	copy fasta	RALGAPB	chr20	38467843	38583858
RALGAPB_chr20_38467843_38583858	0/0	t0016	4151	1	0	1	0	0	0	copy fasta	RALGAPB	chr20	38467843	38583858
RALGAPB_chr20_38467843_38583858	0/0	t0017	4149	1	1	0	0	0	0	copy fasta	RALGAPB	chr20	38467843	38583858
RALGAPB_chr20_38467843_38583858	0/0	t0018	4149	1	0	1	0	0	0	copy fasta	RALGAPB	chr20	38467843	38583858
RALGAPB_chr20_38467843_38583858	0/0	t0019	4149	1	1	0	0	0	0	copy fasta	RALGAPB	chr20	38467843	38583858
RALGAPB_chr20_38467843_38583858	0/0	t0020	4155	1	1	0	0	0	0	copy fasta	RALGAPB	chr20	38467843	38583858
RALGAPB_chr20_38467843_38583858	0/0	t0021	4159	1	1	0	0	0	0	copy fasta	RALGAPB	chr20	38467843	38583858
RALGAPB_chr20_38467843_38583858	0/0	t0022	4157	1	1	0	0	0	0	copy fasta	RALGAPB	chr20	38467843	38583858
RALGAPB_chr20_38467843_38583858	0/0	t0023	4143	1	1	0	0	0	0	copy fasta	RALGAPB	chr20	38467843	38583858
RALGAPB_chr20_38467843_38583858	0/0	t0024	4155	1	1	0	0	0	0	copy fasta	RALGAPB	chr20	38467843	38583858
RALGAPB_chr20_38467843_38583858	0/0	t0025	4151	1	0	1	0	0	0	copy fasta	RALGAPB	chr20	38467843	38583858
RALGAPB_chr20_38467843_38583858	0/0	t0026	4151	1	0	0	0	0	1	copy fasta	RALGAPB	chr20	38467843	38583858
RALGAPB_chr20_38467843_38583858	0/0	t0027	4155	1	1	0	0	0	0	copy fasta	RALGAPB	chr20	38467843	38583858
RALGAPB_chr20_38467843_38583858	0/0	t0028	4151	1	0	1	0	0	0	copy fasta	RALGAPB	chr20	38467843	38583858
RALGAPB_chr20_38467843_38583858	0/0	t0029	4155	1	1	0	0	0	0	copy fasta	RALGAPB	chr20	38467843	38583858
RALGAPB_chr20_38467843_38583858	0/0	t0030	4153	1	1	0	0	0	0	copy fasta	RALGAPB	chr20	38467843	38583858
RALGAPB_chr20_38467843_38583858	0/0	t0031	4149	1	1	0	0	0	0	copy fasta	RALGAPB	chr20	38467843	38583858
RALGDS_chr9_133092722_133126240	1/1	t0001	952	311	77	49	136	10	37	copy fasta	RALGDS	chr9	133092722	133126240
RALGDS_chr9_133092722_133126240	0/0	t0002	952	93	9	33	36	6	9	copy fasta	RALGDS	chr9	133092722	133126240
RALGDS_chr9_133092722_133126240	0/0	t0003	931	4	1	3	0	0	0	copy fasta	RALGDS	chr9	133092722	133126240