JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RALGDS_chr9_133092722_133126240	0/0	t0004	952	3	3	0	0	0	0	copy fasta	RALGDS	chr9	133092722	133126240
RALGDS_chr9_133092722_133126240	0/0	t0005	981	3	3	0	0	0	0	copy fasta	RALGDS	chr9	133092722	133126240
RALGDS_chr9_133092722_133126240	0/0	t0006	952	2	1	1	0	0	0	copy fasta	RALGDS	chr9	133092722	133126240
RALGDS_chr9_133092722_133126240	0/0	t0007	952	1	1	0	0	0	0	copy fasta	RALGDS	chr9	133092722	133126240
RALGDS_chr9_133092722_133126240	0/0	t0008	952	1	1	0	0	0	0	copy fasta	RALGDS	chr9	133092722	133126240
RALGDS_chr9_133092722_133126240	0/0	t0009	952	1	0	0	1	0	0	copy fasta	RALGDS	chr9	133092722	133126240
RALGDS_chr9_133092722_133126240	0/0	t0010	952	1	0	0	1	0	0	copy fasta	RALGDS	chr9	133092722	133126240
RALGDS_chr9_133092722_133126240	0/0	t0011	952	1	0	0	1	0	0	copy fasta	RALGDS	chr9	133092722	133126240
RALGDS_chr9_133092722_133126240	0/0	t0012	952	1	0	0	1	0	0	copy fasta	RALGDS	chr9	133092722	133126240
RALGDS_chr9_133092722_133126240	0/0	t0013	952	1	1	0	0	0	0	copy fasta	RALGDS	chr9	133092722	133126240
RALGDS_chr9_133092722_133126240	0/0	t0014	952	1	1	0	0	0	0	copy fasta	RALGDS	chr9	133092722	133126240
RALGPS1_chr9_126909782_127228166	1/1	t0001	4657	133	14	38	55	8	16	copy fasta	RALGPS1	chr9	126909782	127228166
RALGPS1_chr9_126909782_127228166	0/0	t0002	4657	49	3	9	28	4	5	copy fasta	RALGPS1	chr9	126909782	127228166
RALGPS1_chr9_126909782_127228166	0/0	t0003	4657	22	18	2	2	0	0	copy fasta	RALGPS1	chr9	126909782	127228166
RALGPS1_chr9_126909782_127228166	0/0	t0004	4655	17	0	0	15	0	2	copy fasta	RALGPS1	chr9	126909782	127228166
RALGPS1_chr9_126909782_127228166	0/0	t0005	4657	13	13	0	0	0	0	copy fasta	RALGPS1	chr9	126909782	127228166
RALGPS1_chr9_126909782_127228166	0/0	t0006	4657	8	7	1	0	0	0	copy fasta	RALGPS1	chr9	126909782	127228166
RALGPS1_chr9_126909782_127228166	0/0	t0007	4657	6	5	1	0	0	0	copy fasta	RALGPS1	chr9	126909782	127228166
RALGPS1_chr9_126909782_127228166	0/0	t0008	4657	6	6	0	0	0	0	copy fasta	RALGPS1	chr9	126909782	127228166
RALGPS1_chr9_126909782_127228166	0/0	t0009	4655	3	3	0	0	0	0	copy fasta	RALGPS1	chr9	126909782	127228166
RALGPS1_chr9_126909782_127228166	0/0	t0010	4659	3	0	1	0	1	1	copy fasta	RALGPS1	chr9	126909782	127228166
RALGPS1_chr9_126909782_127228166	0/0	t0011	4657	2	2	0	0	0	0	copy fasta	RALGPS1	chr9	126909782	127228166
RALGPS1_chr9_126909782_127228166	0/0	t0012	4657	1	0	1	0	0	0	copy fasta	RALGPS1	chr9	126909782	127228166
RALGPS1_chr9_126909782_127228166	0/0	t0013	4657	1	1	0	0	0	0	copy fasta	RALGPS1	chr9	126909782	127228166
RALGPS1_chr9_126909782_127228166	0/0	t0014	4657	1	1	0	0	0	0	copy fasta	RALGPS1	chr9	126909782	127228166
RALGPS1_chr9_126909782_127228166	0/0	t0015	4657	1	1	0	0	0	0	copy fasta	RALGPS1	chr9	126909782	127228166
RALGPS1_chr9_126909782_127228166	0/0	t0016	4657	1	0	0	1	0	0	copy fasta	RALGPS1	chr9	126909782	127228166
RALGPS1_chr9_126909782_127228166	0/0	t0017	4657	1	0	1	0	0	0	copy fasta	RALGPS1	chr9	126909782	127228166
RALGPS1_chr9_126909782_127228166	0/0	t0018	4657	1	1	0	0	0	0	copy fasta	RALGPS1	chr9	126909782	127228166
RALGPS1_chr9_126909782_127228166	0/0	t0019	4657	1	1	0	0	0	0	copy fasta	RALGPS1	chr9	126909782	127228166
RALGPS1_chr9_126909782_127228166	0/0	t0020	4657	1	0	0	1	0	0	copy fasta	RALGPS1	chr9	126909782	127228166
RALGPS1_chr9_126909782_127228166	0/0	t0021	4657	1	1	0	0	0	0	copy fasta	RALGPS1	chr9	126909782	127228166
RALGPS1_chr9_126909782_127228166	0/0	t0022	4657	1	1	0	0	0	0	copy fasta	RALGPS1	chr9	126909782	127228166
RALGPS1_chr9_126909782_127228166	0/0	t0023	4657	1	1	0	0	0	0	copy fasta	RALGPS1	chr9	126909782	127228166
RALGPS1_chr9_126909782_127228166	0/0	t0024	4657	1	0	0	0	1	0	copy fasta	RALGPS1	chr9	126909782	127228166
RALGPS1_chr9_126909782_127228166	0/0	t0025	4657	1	1	0	0	0	0	copy fasta	RALGPS1	chr9	126909782	127228166
RALGPS2_chr1_178720244_178926840	0/0	t0001	5744	133	21	25	70	3	14	copy fasta	RALGPS2	chr1	178720244	178926840
RALGPS2_chr1_178720244_178926840	0/0	t0002	5744	48	5	9	30	0	4	copy fasta	RALGPS2	chr1	178720244	178926840
RALGPS2_chr1_178720244_178926840	0/0	t0003	5740	22	0	1	21	0	0	copy fasta	RALGPS2	chr1	178720244	178926840
RALGPS2_chr1_178720244_178926840	0/0	t0004	5740	11	7	4	0	0	0	copy fasta	RALGPS2	chr1	178720244	178926840
RALGPS2_chr1_178720244_178926840	0/0	t0005	5744	8	1	5	0	2	0	copy fasta	RALGPS2	chr1	178720244	178926840
RALGPS2_chr1_178720244_178926840	0/0	t0006	5744	8	8	0	0	0	0	copy fasta	RALGPS2	chr1	178720244	178926840
RALGPS2_chr1_178720244_178926840	0/0	t0007	5741	7	6	1	0	0	0	copy fasta	RALGPS2	chr1	178720244	178926840
RALGPS2_chr1_178720244_178926840	0/0	t0008	5744	6	6	0	0	0	0	copy fasta	RALGPS2	chr1	178720244	178926840
RALGPS2_chr1_178720244_178926840	0/0	t0009	5744	6	6	0	0	0	0	copy fasta	RALGPS2	chr1	178720244	178926840
RALGPS2_chr1_178720244_178926840	0/0	t0010	5741	6	6	0	0	0	0	copy fasta	RALGPS2	chr1	178720244	178926840
RALGPS2_chr1_178720244_178926840	0/0	t0011	5750	4	0	1	3	0	0	copy fasta	RALGPS2	chr1	178720244	178926840
RALGPS2_chr1_178720244_178926840	0/0	t0012	5744	4	1	1	0	0	2	copy fasta	RALGPS2	chr1	178720244	178926840
RALGPS2_chr1_178720244_178926840	0/0	t0013	5744	4	0	4	0	0	0	copy fasta	RALGPS2	chr1	178720244	178926840
RALGPS2_chr1_178720244_178926840	0/0	t0014	5744	3	0	0	3	0	0	copy fasta	RALGPS2	chr1	178720244	178926840