JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RALGPS2_chr1_178720244_178926840	0/0	t0015	5744	2	0	0	0	1	1	copy fasta	RALGPS2	chr1	178720244	178926840
RALGPS2_chr1_178720244_178926840	0/0	t0016	5744	2	1	0	1	0	0	copy fasta	RALGPS2	chr1	178720244	178926840
RALGPS2_chr1_178720244_178926840	0/0	t0017	5744	2	1	1	0	0	0	copy fasta	RALGPS2	chr1	178720244	178926840
RALGPS2_chr1_178720244_178926840	0/0	t0018	5744	2	0	2	0	0	0	copy fasta	RALGPS2	chr1	178720244	178926840
RALGPS2_chr1_178720244_178926840	0/0	t0019	5744	2	2	0	0	0	0	copy fasta	RALGPS2	chr1	178720244	178926840
RALGPS2_chr1_178720244_178926840	0/0	t0020	5744	2	2	0	0	0	0	copy fasta	RALGPS2	chr1	178720244	178926840
RALGPS2_chr1_178720244_178926840	0/0	t0021	5744	2	2	0	0	0	0	copy fasta	RALGPS2	chr1	178720244	178926840
RALGPS2_chr1_178720244_178926840	1/0	t0022	5741	2	1	0	0	0	0	copy fasta	RALGPS2	chr1	178720244	178926840
RALGPS2_chr1_178720244_178926840	0/0	t0023	5741	2	2	0	0	0	0	copy fasta	RALGPS2	chr1	178720244	178926840
RALGPS2_chr1_178720244_178926840	0/0	t0024	5740	1	1	0	0	0	0	copy fasta	RALGPS2	chr1	178720244	178926840
RALGPS2_chr1_178720244_178926840	0/0	t0025	5744	1	1	0	0	0	0	copy fasta	RALGPS2	chr1	178720244	178926840
RALGPS2_chr1_178720244_178926840	0/1	t0026	5744	1	0	0	0	0	0	copy fasta	RALGPS2	chr1	178720244	178926840
RALGPS2_chr1_178720244_178926840	0/0	t0027	5744	1	0	0	0	0	1	copy fasta	RALGPS2	chr1	178720244	178926840
RALGPS2_chr1_178720244_178926840	0/0	t0028	5744	1	1	0	0	0	0	copy fasta	RALGPS2	chr1	178720244	178926840
RALGPS2_chr1_178720244_178926840	0/0	t0029	5744	1	1	0	0	0	0	copy fasta	RALGPS2	chr1	178720244	178926840
RALGPS2_chr1_178720244_178926840	0/0	t0030	5744	1	0	0	1	0	0	copy fasta	RALGPS2	chr1	178720244	178926840
RALGPS2_chr1_178720244_178926840	0/0	t0031	5744	1	0	0	1	0	0	copy fasta	RALGPS2	chr1	178720244	178926840
RALGPS2_chr1_178720244_178926840	0/0	t0032	5744	1	0	1	0	0	0	copy fasta	RALGPS2	chr1	178720244	178926840
RALGPS2_chr1_178720244_178926840	0/0	t0033	5744	1	0	0	1	0	0	copy fasta	RALGPS2	chr1	178720244	178926840
RALGPS2_chr1_178720244_178926840	0/0	t0034	5744	1	0	0	1	0	0	copy fasta	RALGPS2	chr1	178720244	178926840
RALGPS2_chr1_178720244_178926840	0/0	t0035	5744	1	0	0	1	0	0	copy fasta	RALGPS2	chr1	178720244	178926840
RALGPS2_chr1_178720244_178926840	0/0	t0036	5744	1	1	0	0	0	0	copy fasta	RALGPS2	chr1	178720244	178926840
RALGPS2_chr1_178720244_178926840	0/0	t0037	5744	1	0	1	0	0	0	copy fasta	RALGPS2	chr1	178720244	178926840
RALGPS2_chr1_178720244_178926840	0/0	t0038	5744	1	0	0	1	0	0	copy fasta	RALGPS2	chr1	178720244	178926840
RALGPS2_chr1_178720244_178926840	0/0	t0039	5744	1	1	0	0	0	0	copy fasta	RALGPS2	chr1	178720244	178926840
RALGPS2_chr1_178720244_178926840	0/0	t0040	5744	1	1	0	0	0	0	copy fasta	RALGPS2	chr1	178720244	178926840
RALGPS2_chr1_178720244_178926840	0/0	t0041	5741	1	1	0	0	0	0	copy fasta	RALGPS2	chr1	178720244	178926840
RALYL_chr8_84178274_84926844	0/0	t0001	2109	30	17	5	3	3	2	copy fasta	RALYL	chr8	84178274	84926844
RALYL_chr8_84178274_84926844	0/0	t0002	2110	13	12	1	0	0	0	copy fasta	RALYL	chr8	84178274	84926844
RALYL_chr8_84178274_84926844	0/0	t0003	2109	11	7	2	0	0	2	copy fasta	RALYL	chr8	84178274	84926844
RALYL_chr8_84178274_84926844	0/0	t0004	2111	5	5	0	0	0	0	copy fasta	RALYL	chr8	84178274	84926844
RALYL_chr8_84178274_84926844	0/0	t0005	2108	4	1	0	2	1	0	copy fasta	RALYL	chr8	84178274	84926844
RALYL_chr8_84178274_84926844	0/0	t0006	2110	3	3	0	0	0	0	copy fasta	RALYL	chr8	84178274	84926844
RALYL_chr8_84178274_84926844	0/0	t0007	2109	3	1	1	0	1	0	copy fasta	RALYL	chr8	84178274	84926844
RALYL_chr8_84178274_84926844	0/0	t0008	2110	3	1	1	0	0	1	copy fasta	RALYL	chr8	84178274	84926844
RALYL_chr8_84178274_84926844	0/0	t0009	2109	2	2	0	0	0	0	copy fasta	RALYL	chr8	84178274	84926844
RALYL_chr8_84178274_84926844	0/0	t0010	2110	1	1	0	0	0	0	copy fasta	RALYL	chr8	84178274	84926844
RALYL_chr8_84178274_84926844	0/0	t0011	2109	1	0	0	0	0	1	copy fasta	RALYL	chr8	84178274	84926844
RALYL_chr8_84178274_84926844	0/0	t0012	2108	1	0	0	1	0	0	copy fasta	RALYL	chr8	84178274	84926844
RALYL_chr8_84178274_84926844	0/0	t0013	2109	1	1	0	0	0	0	copy fasta	RALYL	chr8	84178274	84926844
RALYL_chr8_84178274_84926844	0/0	t0014	2110	1	1	0	0	0	0	copy fasta	RALYL	chr8	84178274	84926844
RALYL_chr8_84178274_84926844	0/0	t0015	2109	1	0	0	0	1	0	copy fasta	RALYL	chr8	84178274	84926844
RALYL_chr8_84178274_84926844	0/0	t0016	2108	1	1	0	0	0	0	copy fasta	RALYL	chr8	84178274	84926844
RALYL_chr8_84178274_84926844	0/0	t0017	2110	1	1	0	0	0	0	copy fasta	RALYL	chr8	84178274	84926844
RALY_chr20_33988911_34089884	0/1	t0001	5293	92	8	16	42	4	21	copy fasta	RALY	chr20	33988911	34089884
RALY_chr20_33988911_34089884	1/0	t0002	5293	73	14	17	34	2	5	copy fasta	RALY	chr20	33988911	34089884
RALY_chr20_33988911_34089884	0/0	t0003	5293	29	25	4	0	0	0	copy fasta	RALY	chr20	33988911	34089884
RALY_chr20_33988911_34089884	0/0	t0004	5293	29	5	4	14	2	4	copy fasta	RALY	chr20	33988911	34089884
RALY_chr20_33988911_34089884	0/0	t0005	5293	9	9	0	0	0	0	copy fasta	RALY	chr20	33988911	34089884
RALY_chr20_33988911_34089884	0/0	t0006	5293	9	2	4	0	3	0	copy fasta	RALY	chr20	33988911	34089884