JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RALY_chr20_33988911_34089884	0/0	t0007	5293	7	5	2	0	0	0	copy fasta	RALY	chr20	33988911	34089884
RALY_chr20_33988911_34089884	0/0	t0008	5293	4	4	0	0	0	0	copy fasta	RALY	chr20	33988911	34089884
RALY_chr20_33988911_34089884	0/0	t0009	5293	4	0	1	3	0	0	copy fasta	RALY	chr20	33988911	34089884
RALY_chr20_33988911_34089884	0/0	t0010	5293	3	3	0	0	0	0	copy fasta	RALY	chr20	33988911	34089884
RALY_chr20_33988911_34089884	0/0	t0011	5293	3	0	0	3	0	0	copy fasta	RALY	chr20	33988911	34089884
RALY_chr20_33988911_34089884	0/0	t0012	5293	3	0	0	3	0	0	copy fasta	RALY	chr20	33988911	34089884
RALY_chr20_33988911_34089884	0/0	t0013	5293	2	0	0	0	0	2	copy fasta	RALY	chr20	33988911	34089884
RALY_chr20_33988911_34089884	0/0	t0014	5293	2	0	1	0	1	0	copy fasta	RALY	chr20	33988911	34089884
RALY_chr20_33988911_34089884	0/0	t0015	5293	2	2	0	0	0	0	copy fasta	RALY	chr20	33988911	34089884
RALY_chr20_33988911_34089884	0/0	t0016	5293	1	0	0	1	0	0	copy fasta	RALY	chr20	33988911	34089884
RALY_chr20_33988911_34089884	0/0	t0017	5293	1	0	1	0	0	0	copy fasta	RALY	chr20	33988911	34089884
RALY_chr20_33988911_34089884	0/0	t0018	5293	1	0	1	0	0	0	copy fasta	RALY	chr20	33988911	34089884
RALY_chr20_33988911_34089884	0/0	t0019	5293	1	0	0	0	0	1	copy fasta	RALY	chr20	33988911	34089884
RALY_chr20_33988911_34089884	0/0	t0020	5293	1	0	0	1	0	0	copy fasta	RALY	chr20	33988911	34089884
RALY_chr20_33988911_34089884	0/0	t0021	5293	1	0	0	0	0	1	copy fasta	RALY	chr20	33988911	34089884
RALY_chr20_33988911_34089884	0/0	t0022	5293	1	1	0	0	0	0	copy fasta	RALY	chr20	33988911	34089884
RALY_chr20_33988911_34089884	0/0	t0023	5293	1	1	0	0	0	0	copy fasta	RALY	chr20	33988911	34089884
RALY_chr20_33988911_34089884	0/0	t0024	5293	1	1	0	0	0	0	copy fasta	RALY	chr20	33988911	34089884
RALY_chr20_33988911_34089884	0/0	t0025	5293	1	1	0	0	0	0	copy fasta	RALY	chr20	33988911	34089884
RALY_chr20_33988911_34089884	0/0	t0026	5293	1	1	0	0	0	0	copy fasta	RALY	chr20	33988911	34089884
RALY_chr20_33988911_34089884	0/0	t0027	5293	1	0	0	1	0	0	copy fasta	RALY	chr20	33988911	34089884
RALY_chr20_33988911_34089884	0/0	t0028	5293	1	0	0	1	0	0	copy fasta	RALY	chr20	33988911	34089884
RALY_chr20_33988911_34089884	0/0	t0029	5293	1	0	0	1	0	0	copy fasta	RALY	chr20	33988911	34089884
RALY_chr20_33988911_34089884	0/0	t0030	5293	1	0	1	0	0	0	copy fasta	RALY	chr20	33988911	34089884
RALY_chr20_33988911_34089884	0/0	t0031	5293	1	0	0	1	0	0	copy fasta	RALY	chr20	33988911	34089884
RALY_chr20_33988911_34089884	0/0	t0032	5293	1	0	0	1	0	0	copy fasta	RALY	chr20	33988911	34089884
RALY_chr20_33988911_34089884	0/0	t0033	5293	1	1	0	0	0	0	copy fasta	RALY	chr20	33988911	34089884
RALY_chr20_33988911_34089884	0/0	t0034	5293	1	1	0	0	0	0	copy fasta	RALY	chr20	33988911	34089884
RAMACL_chr6_166578009_166591678	0/1	t0001	3315	131	13	21	84	2	10	copy fasta	RAMACL	chr6	166578009	166591678
RAMACL_chr6_166578009_166591678	0/0	t0002	3313	61	11	3	37	3	7	copy fasta	RAMACL	chr6	166578009	166591678
RAMACL_chr6_166578009_166591678	1/0	t0003	3314	44	2	21	9	6	5	copy fasta	RAMACL	chr6	166578009	166591678
RAMACL_chr6_166578009_166591678	0/0	t0004	3316	34	0	8	23	2	1	copy fasta	RAMACL	chr6	166578009	166591678
RAMACL_chr6_166578009_166591678	0/0	t0005	3315	23	3	3	14	0	3	copy fasta	RAMACL	chr6	166578009	166591678
RAMACL_chr6_166578009_166591678	0/0	t0006	2480	21	20	1	0	0	0	copy fasta	RAMACL	chr6	166578009	166591678
RAMACL_chr6_166578009_166591678	0/0	t0007	3315	14	3	0	5	0	6	copy fasta	RAMACL	chr6	166578009	166591678
RAMACL_chr6_166578009_166591678	0/0	t0008	3314	13	1	4	4	3	1	copy fasta	RAMACL	chr6	166578009	166591678
RAMACL_chr6_166578009_166591678	0/0	t0009	2480	12	12	0	0	0	0	copy fasta	RAMACL	chr6	166578009	166591678
RAMACL_chr6_166578009_166591678	0/0	t0010	3317	10	4	2	3	0	1	copy fasta	RAMACL	chr6	166578009	166591678
RAMACL_chr6_166578009_166591678	0/0	t0011	3315	8	2	6	0	0	0	copy fasta	RAMACL	chr6	166578009	166591678
RAMACL_chr6_166578009_166591678	0/0	t0012	3312	8	2	3	1	0	2	copy fasta	RAMACL	chr6	166578009	166591678
RAMACL_chr6_166578009_166591678	0/0	t0013	3316	7	3	0	2	0	2	copy fasta	RAMACL	chr6	166578009	166591678
RAMACL_chr6_166578009_166591678	0/0	t0014	3316	4	0	0	0	0	4	copy fasta	RAMACL	chr6	166578009	166591678
RAMACL_chr6_166578009_166591678	0/0	t0015	2480	4	2	2	0	0	0	copy fasta	RAMACL	chr6	166578009	166591678
RAMACL_chr6_166578009_166591678	0/0	t0016	2480	4	4	0	0	0	0	copy fasta	RAMACL	chr6	166578009	166591678
RAMACL_chr6_166578009_166591678	0/0	t0017	3315	3	0	0	3	0	0	copy fasta	RAMACL	chr6	166578009	166591678
RAMACL_chr6_166578009_166591678	0/0	t0018	3315	3	0	0	3	0	0	copy fasta	RAMACL	chr6	166578009	166591678
RAMACL_chr6_166578009_166591678	0/0	t0019	3315	3	0	0	3	0	0	copy fasta	RAMACL	chr6	166578009	166591678
RAMACL_chr6_166578009_166591678	0/0	t0020	3314	3	2	0	1	0	0	copy fasta	RAMACL	chr6	166578009	166591678
RAMACL_chr6_166578009_166591678	0/0	t0021	3316	3	0	0	3	0	0	copy fasta	RAMACL	chr6	166578009	166591678
RAMACL_chr6_166578009_166591678	0/0	t0022	3315	2	2	0	0	0	0	copy fasta	RAMACL	chr6	166578009	166591678