JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RAMACL_chr6_166578009_166591678	0/0	t0023	3314	2	0	1	0	1	0	copy fasta	RAMACL	chr6	166578009	166591678
RAMACL_chr6_166578009_166591678	0/0	t0024	3314	1	0	1	0	0	0	copy fasta	RAMACL	chr6	166578009	166591678
RAMACL_chr6_166578009_166591678	0/0	t0025	3316	1	0	1	0	0	0	copy fasta	RAMACL	chr6	166578009	166591678
RAMACL_chr6_166578009_166591678	0/0	t0026	3316	1	0	1	0	0	0	copy fasta	RAMACL	chr6	166578009	166591678
RAMACL_chr6_166578009_166591678	0/0	t0027	3316	1	0	0	0	0	1	copy fasta	RAMACL	chr6	166578009	166591678
RAMACL_chr6_166578009_166591678	0/0	t0028	3316	1	0	0	1	0	0	copy fasta	RAMACL	chr6	166578009	166591678
RAMACL_chr6_166578009_166591678	0/0	t0029	3316	1	0	0	1	0	0	copy fasta	RAMACL	chr6	166578009	166591678
RAMACL_chr6_166578009_166591678	0/0	t0030	3316	1	0	0	1	0	0	copy fasta	RAMACL	chr6	166578009	166591678
RAMACL_chr6_166578009_166591678	0/0	t0031	3315	1	0	0	1	0	0	copy fasta	RAMACL	chr6	166578009	166591678
RAMACL_chr6_166578009_166591678	0/0	t0032	3315	1	0	0	1	0	0	copy fasta	RAMACL	chr6	166578009	166591678
RAMACL_chr6_166578009_166591678	0/0	t0033	3315	1	0	1	0	0	0	copy fasta	RAMACL	chr6	166578009	166591678
RAMACL_chr6_166578009_166591678	0/0	t0034	3315	1	0	1	0	0	0	copy fasta	RAMACL	chr6	166578009	166591678
RAMACL_chr6_166578009_166591678	0/0	t0035	3315	1	0	0	1	0	0	copy fasta	RAMACL	chr6	166578009	166591678
RAMACL_chr6_166578009_166591678	0/0	t0036	3315	1	1	0	0	0	0	copy fasta	RAMACL	chr6	166578009	166591678
RAMACL_chr6_166578009_166591678	0/0	t0037	3314	1	0	0	1	0	0	copy fasta	RAMACL	chr6	166578009	166591678
RAMACL_chr6_166578009_166591678	0/0	t0038	3314	1	1	0	0	0	0	copy fasta	RAMACL	chr6	166578009	166591678
RAMACL_chr6_166578009_166591678	0/0	t0039	3313	1	0	0	0	1	0	copy fasta	RAMACL	chr6	166578009	166591678
RAMACL_chr6_166578009_166591678	0/0	t0040	3313	1	1	0	0	0	0	copy fasta	RAMACL	chr6	166578009	166591678
RAMACL_chr6_166578009_166591678	0/0	t0041	3316	1	1	0	0	0	0	copy fasta	RAMACL	chr6	166578009	166591678
RAMACL_chr6_166578009_166591678	0/0	t0042	3316	1	0	0	1	0	0	copy fasta	RAMACL	chr6	166578009	166591678
RAMACL_chr6_166578009_166591678	0/0	t0043	3315	1	0	0	1	0	0	copy fasta	RAMACL	chr6	166578009	166591678
RAMACL_chr6_166578009_166591678	0/0	t0044	3315	1	0	0	1	0	0	copy fasta	RAMACL	chr6	166578009	166591678
RAMACL_chr6_166578009_166591678	0/0	t0045	3315	1	0	0	1	0	0	copy fasta	RAMACL	chr6	166578009	166591678
RAMACL_chr6_166578009_166591678	0/0	t0046	3315	1	0	0	0	0	1	copy fasta	RAMACL	chr6	166578009	166591678
RAMACL_chr6_166578009_166591678	0/0	t0047	2480	1	1	0	0	0	0	copy fasta	RAMACL	chr6	166578009	166591678
RAMACL_chr6_166578009_166591678	0/0	t0048	2480	1	1	0	0	0	0	copy fasta	RAMACL	chr6	166578009	166591678
RAMAC_chr15_82981210_82996057	1/1	t0001	1209	319	83	66	136	13	19	copy fasta	RAMAC	chr15	82981210	82996057
RAMAC_chr15_82981210_82996057	0/0	t0002	1211	63	0	6	33	2	22	copy fasta	RAMAC	chr15	82981210	82996057
RAMAC_chr15_82981210_82996057	0/0	t0003	1209	22	15	5	0	0	2	copy fasta	RAMAC	chr15	82981210	82996057
RAMAC_chr15_82981210_82996057	0/0	t0004	1210	19	1	1	16	1	0	copy fasta	RAMAC	chr15	82981210	82996057
RAMAC_chr15_82981210_82996057	0/0	t0005	1209	4	0	2	1	1	0	copy fasta	RAMAC	chr15	82981210	82996057
RAMAC_chr15_82981210_82996057	0/0	t0006	1209	3	0	1	0	1	1	copy fasta	RAMAC	chr15	82981210	82996057
RAMAC_chr15_82981210_82996057	0/0	t0007	1209	2	0	0	2	0	0	copy fasta	RAMAC	chr15	82981210	82996057
RAMAC_chr15_82981210_82996057	0/0	t0008	1209	1	0	0	1	0	0	copy fasta	RAMAC	chr15	82981210	82996057
RAMAC_chr15_82981210_82996057	0/0	t0009	1209	1	1	0	0	0	0	copy fasta	RAMAC	chr15	82981210	82996057
RAMAC_chr15_82981210_82996057	0/0	t0010	1211	1	0	0	0	0	1	copy fasta	RAMAC	chr15	82981210	82996057
RAMAC_chr15_82981210_82996057	0/0	t0011	1211	1	0	0	0	0	1	copy fasta	RAMAC	chr15	82981210	82996057
RAMAC_chr15_82981210_82996057	0/0	t0012	1209	1	0	0	1	0	0	copy fasta	RAMAC	chr15	82981210	82996057
RAMAC_chr15_82981210_82996057	0/0	t0013	1210	1	0	1	0	0	0	copy fasta	RAMAC	chr15	82981210	82996057
RAMP1_chr2_237854623_237917106	1/1	t0001	377	390	87	74	167	17	43	copy fasta	RAMP1	chr2	237854623	237917106
RAMP1_chr2_237854623_237917106	0/0	t0002	377	6	5	0	1	0	0	copy fasta	RAMP1	chr2	237854623	237917106
RAMP1_chr2_237854623_237917106	0/0	t0003	377	5	5	0	0	0	0	copy fasta	RAMP1	chr2	237854623	237917106
RAMP1_chr2_237854623_237917106	0/0	t0004	377	1	1	0	0	0	0	copy fasta	RAMP1	chr2	237854623	237917106
RAMP1_chr2_237854623_237917106	0/0	t0005	377	1	0	0	0	1	0	copy fasta	RAMP1	chr2	237854623	237917106
RAMP1_chr2_237854623_237917106	0/0	t0006	377	1	0	0	0	0	1	copy fasta	RAMP1	chr2	237854623	237917106
RAMP2_chr17_42756227_42768041	1/1	t0001	225	354	94	78	120	16	44	copy fasta	RAMP2	chr17	42756227	42768041
RAMP3_chr7_45152791_45189250	1/0	t0001	877	165	19	14	102	4	25	copy fasta	RAMP3	chr7	45152791	45189250
RAMP3_chr7_45152791_45189250	0/1	t0002	877	106	3	30	60	5	7	copy fasta	RAMP3	chr7	45152791	45189250
RAMP3_chr7_45152791_45189250	0/0	t0003	877	86	35	14	21	4	12	copy fasta	RAMP3	chr7	45152791	45189250
RAMP3_chr7_45152791_45189250	0/0	t0004	877	23	12	8	0	2	1	copy fasta	RAMP3	chr7	45152791	45189250